Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0759.Seq
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02890.1 68415.m00239 F-box family protein contains Pfam PF00...    31   0.75 
At1g19230.1 68414.m02393 respiratory burst oxidase protein E (Rb...    30   1.3  
At5g21080.1 68418.m02510 expressed protein predicted proteins - ...    29   3.0  
At1g43690.1 68414.m05019 ubiquitin interaction motif-containing ...    29   4.0  
At1g05880.1 68414.m00616 expressed protein                             28   5.3  
At4g33630.2 68417.m04778 expressed protein                             28   7.0  
At4g33630.1 68417.m04777 expressed protein                             28   7.0  
At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa...    28   7.0  
At5g15410.2 68418.m01803 cyclic nucleotide-regulated ion channel...    27   9.3  
At5g15410.1 68418.m01804 cyclic nucleotide-regulated ion channel...    27   9.3  
At1g64960.1 68414.m07363 expressed protein                             27   9.3  

>At2g02890.1 68415.m00239 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 531

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +1

Query: 490 AARNHHTAALNAPLQGASVALFG----KCARNPNLFIFLNTFKYVSAHETITLINASIIL 657
           AAR+  T A    L  AS A F       A  P L  F  TF  +  +E    +NAS+ +
Sbjct: 65  AARSALTLASAFTLSLASTAAFSVFSLASAYAPALLCFCETFGSLKGYEVENHMNASVTM 124

Query: 658 KKEEYEYSTF 687
            +E   YS+F
Sbjct: 125 LEEAIMYSSF 134


>At1g19230.1 68414.m02393 respiratory burst oxidase protein E
           (RbohE) / NADPH oxidase nearly identical to respiratory
           burst oxidase protein E GI:3242787 [gi:3242787] from
           [Arabidopsis thaliana]
          Length = 926

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +3

Query: 231 WNK-SPLLKTWTPTSK--GEKPSIRAMAHYVNHHPNQVFWGRGAVK 359
           WN  +    T TPTS   G+K +++A  ++V   P  V W RG ++
Sbjct: 768 WNSCTSSYTTATPTSTHGGKKKAVKAHFYWVTREPGSVEWFRGVME 813


>At5g21080.1 68418.m02510 expressed protein predicted proteins -
           Arabidopsis thaliana; expression supported by MPSS
          Length = 980

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = -1

Query: 285 VFRPLTLESTSLIVDSCSKLEQHSTLSRSILLIYKG 178
           +FR L LES +  VD  +K+E+ STLSRS     +G
Sbjct: 523 LFRKLKLESDNS-VDDTAKMERVSTLSRSTSKFIRG 557


>At1g43690.1 68414.m05019 ubiquitin interaction motif-containing
           protein contains Pfam profile PF02809: Ubiquitin
           interaction motif
          Length = 599

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +3

Query: 165 EIGKIPYKSKE*TEIGLSVVPVWNKSPLLKTWTPTSKGEKPSIRAMAHYVNHHP 326
           E G +P +    T++ +SV P W     +    P S  EK S       V H P
Sbjct: 522 EGGMVPMQRPRLTKLNVSVPPKWTPEEYMTCALPPSSSEKDSEVNQPKPVQHAP 575


>At1g05880.1 68414.m00616 expressed protein
          Length = 426

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 157 WLKNELI*QKFNANFNKILTLTICHSPLQAAQLLGRAIGAGL 32
           W  NEL+ QK  AN  K+ T+ + ++ L+    L   + AGL
Sbjct: 275 WDSNELLMQKEQANLPKLDTIELSNTQLENVSQLKFILEAGL 316


>At4g33630.2 68417.m04778 expressed protein
          Length = 684

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 466 PSARSFRFLPFLSRHVRRLSPSSSKSGAPFRVP 368
           P +++  F P  S    RL+PSS +S  P R+P
Sbjct: 7   PPSQNLAFSPAASATSSRLTPSSKRSFYPHRLP 39


>At4g33630.1 68417.m04777 expressed protein
          Length = 684

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 466 PSARSFRFLPFLSRHVRRLSPSSSKSGAPFRVP 368
           P +++  F P  S    RL+PSS +S  P R+P
Sbjct: 7   PPSQNLAFSPAASATSSRLTPSSKRSFYPHRLP 39


>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
           family protein similar to C-terminal zinc-finger
           [Glycine max] GI:558543; contains Pfam profile: PF00097
           zinc finger, C3HC4 type (RING finger)
          Length = 486

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 261 TPTSKGEKPSIRAMAHYVNHHP 326
           T +S+   PS+    HY++HHP
Sbjct: 260 TSSSRNPTPSVYQRNHYISHHP 281


>At5g15410.2 68418.m01803 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC2) identical to
           cyclic nucleotide-gated cation channel GI:3894399 from
           [Arabidopsis thaliana]
          Length = 593

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
 Frame = -1

Query: 678 ILILFLFQYY*SIYQGYCLM------SGYIFECI 595
           +L++FLFQ+   IY   CLM      +GYIF  I
Sbjct: 123 LLLIFLFQFLPKIYHCICLMRRMQKVTGYIFGTI 156


>At5g15410.1 68418.m01804 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC2) identical to
           cyclic nucleotide-gated cation channel GI:3894399 from
           [Arabidopsis thaliana]
          Length = 726

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
 Frame = -1

Query: 678 ILILFLFQYY*SIYQGYCLM------SGYIFECI 595
           +L++FLFQ+   IY   CLM      +GYIF  I
Sbjct: 256 LLLIFLFQFLPKIYHCICLMRRMQKVTGYIFGTI 289


>At1g64960.1 68414.m07363 expressed protein
          Length = 1168

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 347 RCRKALNRNPKGSPRF 394
           RCR  +NRNPK   RF
Sbjct: 552 RCRTLINRNPKAGARF 567


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,484,725
Number of Sequences: 28952
Number of extensions: 281188
Number of successful extensions: 660
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)