Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0757.Seq
         (667 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    29   0.034
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    28   0.060
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    28   0.060
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           24   0.97 
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    24   0.97 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.7  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   3.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   3.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   3.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   3.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.9  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 29.1 bits (62), Expect = 0.034
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +1

Query: 268 PRFDEGRPVTFGTVDDEGRIVAYPDYSWHENQGQNCGGLTSVFRVAIDECN 420
           P+  E  P T  + D   RI A     WHE   +    L SVFR+  D+C+
Sbjct: 283 PQITELEPETIESQDAITRIYAIATM-WHETPEEMMEFLKSVFRLDQDQCS 332


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 28.3 bits (60), Expect = 0.060
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +1

Query: 268 PRFDEGRPVTFGTVDDEGRIVAYPDYSWHENQGQNCGGLTSVFRVAIDECN 420
           P+  E  P T  + D   RI A     WHE   +    L SVFR+  D+C+
Sbjct: 516 PQITELEPETIESQDAITRIYACGTM-WHETPEEMMEFLKSVFRLDQDQCS 565


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 28.3 bits (60), Expect = 0.060
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +1

Query: 268 PRFDEGRPVTFGTVDDEGRIVAYPDYSWHENQGQNCGGLTSVFRVAIDECN 420
           P+  E  P T  + D   RI A     WHE   +    L SVFR+  D+C+
Sbjct: 516 PQITELEPETIESQDAITRIYACGTM-WHETPEEMMEFLKSVFRLDQDQCS 565


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
 Frame = -1

Query: 655 TSSPNPDTS-------ATYAHVLAQSPGNSGLTSTTGVI 560
           T+SP PD         A  A  L Q PG+S  ++T+G +
Sbjct: 77  TTSPEPDPEIPVAPEPAPLASPLVQEPGSSTTSATSGAV 115



 Score = 24.2 bits (50), Expect = 0.97
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 117 GNGRNWSSCFRTKKPGHMH*RNDF 188
           GN ++W+  F+ K  G+   R DF
Sbjct: 190 GNAKHWTGIFQKKWRGYEDFRRDF 213


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 325 YVPRRLQFQMSQDVLRQNEVLSQIPRFF 242
           +VPRR+ F + ++  R+N +   + R F
Sbjct: 331 FVPRRVPFDLFENKKRKNNIKLYVRRVF 358


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 469 PPQVLAFDLATDRLCIGMSSTYQVTL 546
           PPQ+L FD   D +  G   + Q T+
Sbjct: 602 PPQILPFDFGEDSINEGDGVSVQCTV 627


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 349 WHENQGQNCGGLTSVFRVAIDECNRLWIMDAGKIGDTQY 465
           WHEN+ +    L S+ R+  D+  R       ++ D  Y
Sbjct: 570 WHENKEEMMEFLKSILRLDEDQSARRVAQKYLRVVDPDY 608


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 349 WHENQGQNCGGLTSVFRVAIDECNRLWIMDAGKIGDTQY 465
           WHEN+ +    L S+ R+  D+  R       ++ D  Y
Sbjct: 570 WHENKEEMMEFLKSILRLDEDQSARRVAQKYLRVVDPDY 608


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 349 WHENQGQNCGGLTSVFRVAIDECNRLWIMDAGKIGDTQY 465
           WHEN+ +    L S+ R+  D+  R       ++ D  Y
Sbjct: 570 WHENKEEMMEFLKSILRLDEDQSARRVAQKYLRVVDPDY 608


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 349 WHENQGQNCGGLTSVFRVAIDECNRLWIMDAGKIGDTQY 465
           WHEN+ +    L S+ R+  D+  R       ++ D  Y
Sbjct: 570 WHENKEEMMEFLKSILRLDEDQSARRVAQKYLRVVDPDY 608


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/46 (21%), Positives = 20/46 (43%)
 Frame = -3

Query: 155 LRSETRTPVPPIASPRGDYSSLRDRANSTPNNMTIEKIARFRTTFP 18
           ++S+   P P I SP    +S     ++ PN+  +  + +     P
Sbjct: 412 MQSQIINPQPQITSPSNTNTSTSSTNSNKPNSSDLNMLIKETMPLP 457


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,048
Number of Sequences: 336
Number of extensions: 4184
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)