Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0757.Seq
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    29   0.80 
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    28   1.1  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   1.8  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   2.4  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    26   4.2  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   5.6  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   9.8  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   9.8  

>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = -2

Query: 237 DLCCTSTSIGTEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTTRRLFFA 91
           D  C   S G E P   N F N+Y R  S  +  SS   C T   L F+
Sbjct: 85  DYLCKKVSKGPESPRV-NSFHNSYSRNQSPISRKSSCVTCSTVLPLEFS 132


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 142 HELQFRPLPHHAEIILRSETGPTARQT 62
           H  Q  PLP+H   +   ET PT  QT
Sbjct: 622 HNKQTNPLPYHIVYMFSFETSPTVFQT 648


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 50  LLSYCLACCWPGLGAKNNLRV-VRQWAELEFVFPN 151
           LLS   ACC    G + N+++ V  + E+  V+PN
Sbjct: 618 LLSLWTACCVTDEGKEKNIKIAVEIFREISIVYPN 652


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 134  PVPPIASPRGD-YSSLRDRANSTPNNMTIEK 45
            P PP    + D Y +L D A  +PN MTI+K
Sbjct: 1099 PPPPAEVEKKDLYLALYDFAGRSPNEMTIKK 1129


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 185 IVSLMHMTGLLRSETRTPVPPIASPRGDYSSLRDRANST 69
           + S++ +T  L+S T +P PP++SP    S      N +
Sbjct: 317 VSSVVSVTSPLQSCTNSPSPPLSSPASSASPSESLRNES 355


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 413  SSIATLNTEVSPPQFC 366
            SS+A +N EVSPP+ C
Sbjct: 1315 SSLARMNREVSPPKGC 1330


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = -2

Query: 180  FSNAYDRASSFGNTNSSSAHCLTTRRLFFAPRPGQQHAKQYDNRKNRSIPYDISSLKASN 1
            +SN  D+ +S  + ++S +   ++  LF   R    HA +   ++ +    D  SLK  N
Sbjct: 974  YSNPDDKNTSTSDEDTSESEEESSNGLFSLAREANSHASKSLPQRRQIQFLDFDSLKTKN 1033


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -2

Query: 252 RDFLPDLCCTSTSIGTEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTTRRLF 97
           ++ L  + C  +SIG     T  + +N+Y     F  TN S +  +T  R F
Sbjct: 527 KEILAKITCFCSSIGLTVSPTKTKITNSYTDKILFLGTNISHSKNVTFSRHF 578


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,997,323
Number of Sequences: 5004
Number of extensions: 67296
Number of successful extensions: 188
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)