Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0757.Seq
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0440 - 10273032-10273259,10273423-10273461,10273875-102741...    31   0.82 
08_01_1070 + 10932102-10932291,10936686-10936947,10937158-109372...    29   3.3  
04_03_0858 + 20357519-20357573,20358072-20358119,20360675-203609...    28   5.8  

>02_02_0440 -
           10273032-10273259,10273423-10273461,10273875-10274123,
           10274203-10274329,10275009-10275251,10275359-10275457,
           10275566-10275681,10275813-10276039,10276164-10276276,
           10276402-10276522,10276641-10276855,10277042-10277225,
           10277739-10278048,10278155-10278249,10278473-10278485
          Length = 792

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -1

Query: 505 DLWPGQTL--RPEVDNIVYLQSCRRPLSRDDCIHQSQL 398
           D+W G+TL   P V+N  YL+  ++  +R   +HQ +L
Sbjct: 456 DVWIGKTLYRMPIVNNATYLELAKQDFNRCQALHQHEL 493


>08_01_1070 +
           10932102-10932291,10936686-10936947,10937158-10937292,
           10937468-10938791
          Length = 636

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = +1

Query: 319 GRIVAYPDYSWHENQGQNCG-GLTSVFRVAIDECNRLWIMDAGKIGDTQYCPPQVLAFDL 495
           G  V +P + W    G+NCG  +   F +A       +      +G    CPP + A  L
Sbjct: 162 GATVLWPIFQWFFAGGKNCGFQIFPTFGMAAYRRGFYFDFSTTNVGIGMICPPMITASML 221

Query: 496 A 498
           A
Sbjct: 222 A 222


>04_03_0858 +
           20357519-20357573,20358072-20358119,20360675-20360922,
           20361152-20361363,20361480-20361741,20361832-20362143
          Length = 378

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 3/89 (3%)
 Frame = -3

Query: 302 PNVTGRPSSKRGIVTNSAIFYLTYVAHRHQSAPRTQVRKIVSLMHMTGLLRSETRTPVPP 123
           P + G P       T + +    Y+A+     P+ Q +  +  +H     R +     P 
Sbjct: 59  PKICGSPGGPPITGTRTRLKDGRYLAYLESGVPKEQAKYKIIFVHGFDSCRYDALPISPE 118

Query: 122 IASPRGDYSSLRDR---ANSTPNNMTIEK 45
           +A   G Y    DR   A S PN  + EK
Sbjct: 119 LAQELGIYQLSFDRPGYAESDPNLASTEK 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,098,700
Number of Sequences: 37544
Number of extensions: 463594
Number of successful extensions: 1281
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)