Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0757.Seq
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_12450| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_12127| Best HMM Match : Endonuclease_NS (HMM E-Value=2.9e-35)       29   3.4  
SB_32719| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)              29   4.5  
SB_43842| Best HMM Match : RNB (HMM E-Value=0)                         28   7.9  

>SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1571

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 206 PRTQVRKIVSLMHMTGLLRSETRTPVPPIAS 114
           PR  V+KI+   H  GL+ + T T  P +AS
Sbjct: 820 PRFLVKKIIVFTHKKGLIMNPTGTTTPSLAS 850


>SB_12450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 463 YCPPQVLAFDLATDRLCIGMSSTYQVTLHPLDLLHPW 573
           + P ++L F LAT    +G++     TLH + ++  W
Sbjct: 11  HSPSKILLFSLATSDFLVGIALQPMYTLHLMSMVRDW 47


>SB_12127| Best HMM Match : Endonuclease_NS (HMM E-Value=2.9e-35)
          Length = 1577

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 649  SPNPDTSATYAHVLAQSPGNSGLTSTTG 566
            +PN  T  + AH+LAQ P N  ++S  G
Sbjct: 1175 APNDGTDGSLAHMLAQPPNNIPVSSPVG 1202


>SB_32719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 604

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/70 (27%), Positives = 29/70 (41%)
 Frame = +3

Query: 51  YCHIVWRAVGPVSERRIISAW*GNGRNWSSCFRTKKPGHMH*RNDFTYLGPRCRLMSMCN 230
           YC I +  +GP  +R+ +       +N  +C         H +    YLG  C  M+ C 
Sbjct: 256 YCSIAY--LGPNCDRKNLCHPDNPCKNGGTCKTDGSTVACHCKEG--YLGSHCEQMNFCY 311

Query: 231 IGQVKNRGIC 260
               KN+G C
Sbjct: 312 GNPCKNKGTC 321


>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
          Length = 1325

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/87 (25%), Positives = 38/87 (43%)
 Frame = -3

Query: 329 TIRPSSSTVPNVTGRPSSKRGIVTNSAIFYLTYVAHRHQSAPRTQVRKIVSLMHMTGLLR 150
           T  P  ST  +V    S++  I T + + ++   A    S PR       + ++ T  +R
Sbjct: 660 TAIPRVSTPRHVYDSYSTR--IYTTTRVRHVNTTAIPRVSTPRHAYDSYSTRIYTTTRVR 717

Query: 149 SETRTPVPPIASPRGDYSSLRDRANST 69
               T +P +++PR  Y S   R  +T
Sbjct: 718 QVNTTAIPRVSTPRHAYDSYSTRIYTT 744



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/83 (22%), Positives = 34/83 (40%)
 Frame = -3

Query: 266  IVTNSAIFYLTYVAHRHQSAPRTQVRKIVSLMHMTGLLRSETRTPVPPIASPRGDYSSLR 87
            I T + + ++   A    S PR       + ++ T  +R    T +P +++PR  Y S  
Sbjct: 772  IYTTTRVRHVNTTAIPRVSTPRHAYDSYSTRIYTTTRVRQVNTTAIPRVSTPRHAYDSYS 831

Query: 86   DRANSTPNNMTIEKIARFRTTFP 18
             R  +T     +   A  R + P
Sbjct: 832  TRIYTTTRVRHVNTTAIPRVSTP 854



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/83 (21%), Positives = 33/83 (39%)
 Frame = -3

Query: 266  IVTNSAIFYLTYVAHRHQSAPRTQVRKIVSLMHMTGLLRSETRTPVPPIASPRGDYSSLR 87
            I T + +  L +   RH +    Q     + ++ T  +R      +P +++PR  Y S  
Sbjct: 1176 IYTTTRVRQLFHAYLRHDTCTTGQHDSYSTRIYTTTRVRQVNTIAIPRVSTPRHAYDSYS 1235

Query: 86   DRANSTPNNMTIEKIARFRTTFP 18
             R  +T     +   A  R + P
Sbjct: 1236 TRIYTTTRVRQLNTTAILRVSTP 1258


>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
          Length = 1238

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 77   WPGLGA-KNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSV 208
            W  LG+  N+ R+ R+W  L   F ++  R +     FY P  +V
Sbjct: 1159 WTNLGSTSNSWRLTRRWVTLMVDFDSDALRFWGKGYGFYEPSLAV 1203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,361,531
Number of Sequences: 59808
Number of extensions: 541076
Number of successful extensions: 1575
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1573
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)