Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0757.Seq
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81059-6|CAB02929.2|  172|Caenorhabditis elegans Hypothetical pr...    31   0.97 
L15313-1|AAA28202.1|  305|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AC006676-6|AAK71384.2|  652|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.    28   5.2  
Z49909-2|CAB60994.1|  375|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AY303575-1|AAP57297.1|  382|Caenorhabditis elegans cell death-re...    27   9.1  
AF058329-1|AAD20727.1|  375|Caenorhabditis elegans unknown protein.    27   9.1  
AC024791-9|AAF60653.1|  382|Caenorhabditis elegans Cell-death-re...    27   9.1  

>Z81059-6|CAB02929.2|  172|Caenorhabditis elegans Hypothetical
           protein F11F1.7 protein.
          Length = 172

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = -2

Query: 459 CISNLAGVHYPETIAFINRNSKHRS*SSAVLPL------VFVPRIIRIGN 328
           C S+   ++ P+   +I  N  HR  S+A  P+      +F+P I+R+GN
Sbjct: 114 CASDFGPINTPDPYLYIQHNCPHRD-SNATNPIQIDVIPLFLPSIVRLGN 162


>L15313-1|AAA28202.1|  305|Caenorhabditis elegans Hypothetical
           protein ZK353.4 protein.
          Length = 305

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/62 (22%), Positives = 31/62 (50%)
 Frame = -1

Query: 583 LTSTTGVINQEGEV*LDMLTTCRYTVDLWPGQTLRPEVDNIVYLQSCRRPLSRDDCIHQS 404
           + +T+   N+ GE+ +++++  +Y   L P   L PE    V   +  +P+S  +   +S
Sbjct: 172 MANTSSSANRTGEISVEIVSPSKYFQCLLPTHNLIPEPTTAVQASTPEKPMSSAESAMES 231

Query: 403 QL 398
            +
Sbjct: 232 SI 233


>AC006676-6|AAK71384.2|  652|Caenorhabditis elegans Hypothetical
           protein M04F3.5 protein.
          Length = 652

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 652 SSPNPDTSATYAHVLAQSPGNSGLTSTT 569
           SSPN D S+TY +++    GNS   + T
Sbjct: 330 SSPNTDGSSTYLNLMGNGAGNSSSNTIT 357


>Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical
           protein E02H4.1 protein.
          Length = 664

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -2

Query: 183 RFSNAYDRASSFGNTNSSSAHCLTTRRLFFAPRPGQQHAK 64
           R+   + R++   +TN+++ +CLTT     + +  Q+H K
Sbjct: 493 RYPKPWKRSAWCDSTNTTTLNCLTTEGAKLSTKENQKHCK 532


>U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.
          Length = 664

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -2

Query: 183 RFSNAYDRASSFGNTNSSSAHCLTTRRLFFAPRPGQQHAK 64
           R+   + R++   +TN+++ +CLTT     + +  Q+H K
Sbjct: 493 RYPKPWKRSAWCDSTNTTTLNCLTTEGAKLSTKENQKHCK 532


>Z49909-2|CAB60994.1|  375|Caenorhabditis elegans Hypothetical
           protein C14A4.2 protein.
          Length = 375

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 400 VAIDECNRLWIMDAGKIGDTQYCPPQVL 483
           VAID+ N LW     K  D  Y PP  L
Sbjct: 233 VAIDDANSLWGKTLVKRADRTYAPPSDL 260


>AY303575-1|AAP57297.1|  382|Caenorhabditis elegans cell
           death-related nuclease 1 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = +2

Query: 20  EMSYGIERFFLLSYCLACCW----PGLGAKNNLRVVRQWAELEFVFPNEEARSY 169
           EM   +E F  L   L C +     G+G K  + ++RQ   +E +  N +   Y
Sbjct: 215 EMKLSVEEFIDLCILLGCDYCGTIRGVGPKKAVELIRQHKNIETILENIDQNKY 268


>AF058329-1|AAD20727.1|  375|Caenorhabditis elegans unknown protein.
          Length = 375

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 400 VAIDECNRLWIMDAGKIGDTQYCPPQVL 483
           VAID+ N LW     K  D  Y PP  L
Sbjct: 233 VAIDDANSLWGKTLVKRADRTYAPPSDL 260


>AC024791-9|AAF60653.1|  382|Caenorhabditis elegans
           Cell-death-related nuclease protein1 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = +2

Query: 20  EMSYGIERFFLLSYCLACCW----PGLGAKNNLRVVRQWAELEFVFPNEEARSY 169
           EM   +E F  L   L C +     G+G K  + ++RQ   +E +  N +   Y
Sbjct: 215 EMKLSVEEFIDLCILLGCDYCGTIRGVGPKKAVELIRQHKNIETILENIDQNKY 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,969,715
Number of Sequences: 27780
Number of extensions: 395182
Number of successful extensions: 1118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)