Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0757.Seq
         (667 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78740.1 68414.m09177 hypothetical protein                          30   1.6  
At4g23390.1 68417.m03372 expressed protein   contains Pfam profi...    29   2.1  
At2g44910.1 68415.m05590 homeobox-leucine zipper protein 4 (HB-4...    29   2.1  
At1g10400.1 68414.m01172 UDP-glucoronosyl/UDP-glucosyl transfera...    29   2.8  
At2g45420.1 68415.m05650 LOB domain protein 18 / lateral organ b...    28   4.9  

>At1g78740.1 68414.m09177 hypothetical protein
          Length = 306

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +2

Query: 92  AKNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVDVQHRSGKKSRNL 259
           A+ +L +V     LE++  ++   S  + K    PGS V +D+D+   SG  SRN+
Sbjct: 190 AEKDLSIVIDAPRLEYLKLSDHQTSSFIIKN---PGSLVAVDIDINLSSGFDSRNM 242


>At4g23390.1 68417.m03372 expressed protein   contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 401

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +3

Query: 60  IVWRAVGPVSERRIISAW*GNGRNWSSCFRTKKPGHMH 173
           IV+  +   ++  + + W  +G N + C+ T +PG +H
Sbjct: 208 IVYPGLNQNNQSHLFTYWTADGNNKTHCYNTLRPGFVH 245


>At2g44910.1 68415.m05590 homeobox-leucine zipper protein 4 (HB-4) /
           HD-ZIP protein 4 identical to  Homeobox-leucine zipper
           protein ATHB-4 (HD-ZIP protein ATHB-4)  (SP:P92953)
           [Arabidopsis thaliana]
          Length = 318

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
 Frame = -3

Query: 398 LNTEVSPPQ---FCPWFSCQE*SG*A---TIRPSSSTVPNVTGRPSSKR 270
           L   ++PP     CP  SC+  S  A   T  PS++T P V GRPS +R
Sbjct: 257 LYMHMTPPTTLTMCP--SCERVSSSAATVTAAPSTTTTPTVVGRPSPQR 303


>At1g10400.1 68414.m01172 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 365

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 470 GQYCVSPILPASIIQRRLHSSIATLNTEVSPPQFCPWFSCQE 345
           G  C S ++  S+ Q +L S++ +    VS P+F PW   ++
Sbjct: 43  GMNCASTVICDSVFQNQLLSNVKSETEPVSVPEF-PWIKVRK 83


>At2g45420.1 68415.m05650 LOB domain protein 18 / lateral organ
           boundaries domain protein 18 (LBD18) identical to LOB
           DOMAIN 18 [Arabidopsis thaliana] GI:17227164; supported
           by full-length cDNA gi:17227163
          Length = 262

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -2

Query: 207 TEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTTRRLFFAPR 85
           T+ P + +   + YD AS F  T SSSA   T +R F  PR
Sbjct: 170 TDLPASVSPLPSTYDLASIFDQTTSSSAWA-TQQRRFIDPR 209


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,939,643
Number of Sequences: 28952
Number of extensions: 362890
Number of successful extensions: 975
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)