Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0756.Seq
(744 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 183 2e-46
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 182 2e-46
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 160 1e-39
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 134 5e-32
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 77 2e-14
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 1e-12
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 58 1e-08
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 9e-08
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 42 5e-04
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_47707| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 31 0.99
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 30 1.7
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 30 2.3
SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3) 29 3.0
SB_7343| Best HMM Match : EGF (HMM E-Value=0) 29 4.0
SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_27085| Best HMM Match : Filamin (HMM E-Value=1.5) 29 5.3
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 29 5.3
SB_41920| Best HMM Match : Filamin (HMM E-Value=0.00015) 29 5.3
SB_51476| Best HMM Match : Ion_trans (HMM E-Value=6.29996e-41) 28 7.0
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_57471| Best HMM Match : TatC (HMM E-Value=0.27) 28 9.2
SB_45916| Best HMM Match : Cadherin (HMM E-Value=0) 28 9.2
SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40) 28 9.2
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 183 bits (445), Expect = 2e-46
Identities = 95/168 (56%), Positives = 114/168 (67%), Gaps = 1/168 (0%)
Frame = +1
Query: 241 PQQHKFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 420
P+ FDAKRLIGRKF+D V DM HWPF V+ +G +PKI+V +KGE K+FFPEE+SSM
Sbjct: 63 PENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEISSM 122
Query: 421 VLTKMKETAEAYLGKTVQNAVITVPAYFNALKDKPQKMQVPSLA*TFSESSMNXXXXXXX 600
VLTKMKETAEAYLG V +AV+TVPAYF+ + + K ++A +N
Sbjct: 123 VLTKMKETAEAYLGAKVTDAVVTVPAYFHDSQRQATK-DAGTIAGLNVLRIINEPTAAAI 181
Query: 601 XXXXXXXXENEM-YLSFDLGGGTFDVSILTIEDGIFEVKSTAGDTHFG 741
E L +DLGGGTFDVS+LTIEDGIFEVKSTAGDTH G
Sbjct: 182 AYGLDKKVGVERNVLIYDLGGGTFDVSVLTIEDGIFEVKSTAGDTHLG 229
Score = 136 bits (329), Expect = 2e-32
Identities = 63/66 (95%), Positives = 64/66 (96%)
Frame = +2
Query: 56 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 235
MAK PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF+DTERLIGDAAKNQVA
Sbjct: 1 MAKTPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVA 60
Query: 236 MNPNNT 253
MNP NT
Sbjct: 61 MNPENT 66
Score = 82.6 bits (195), Expect = 3e-16
Identities = 41/46 (89%), Positives = 43/46 (93%)
Frame = +3
Query: 510 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIF 647
SQRQATKDAGTI+GLNVLRIINEPTAAAIAYGLDKK ERNVLI+
Sbjct: 153 SQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGVERNVLIY 198
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 182 bits (444), Expect = 2e-46
Identities = 98/169 (57%), Positives = 117/169 (69%), Gaps = 2/169 (1%)
Frame = +1
Query: 241 PQQHKFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 420
P+ FDAKRLIGR+++DATVQ+DMK WPF+++SD KPKI+V YKGE KTF EE+SSM
Sbjct: 63 PENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEISSM 122
Query: 421 VLTKMKETAEAYLGKTVQNAVITVPAYFNALKDKPQKMQVPSLA*TFSESSMNXXXXXXX 600
VL KMKETAEAYLG+ V +AVITVPAYFN + + K ++A +N
Sbjct: 123 VLGKMKETAEAYLGQKVTSAVITVPAYFNDSQRQATK-DAGTIAGLNVLRVINEPTAAAL 181
Query: 601 XXXXXXXXENEM-YLSFDLGGGTFDVSILTIEDG-IFEVKSTAGDTHFG 741
E L FDLGGGTFDVSILTI+DG +FEVKSTAGDTH G
Sbjct: 182 AYGLDKSLSGEKNVLIFDLGGGTFDVSILTIDDGSLFEVKSTAGDTHLG 230
Score = 131 bits (317), Expect = 5e-31
Identities = 59/66 (89%), Positives = 63/66 (95%)
Frame = +2
Query: 56 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 235
M KAPA+GIDLGTTYSCVGVFQ+GKVEIIANDQGNRTTPSYV FTDTERL+GDAAKNQVA
Sbjct: 1 MGKAPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQVA 60
Query: 236 MNPNNT 253
+NP NT
Sbjct: 61 LNPENT 66
Score = 83.8 bits (198), Expect = 1e-16
Identities = 39/46 (84%), Positives = 44/46 (95%)
Frame = +3
Query: 510 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIF 647
SQRQATKDAGTI+GLNVLR+INEPTAAA+AYGLDK +GE+NVLIF
Sbjct: 153 SQRQATKDAGTIAGLNVLRVINEPTAAALAYGLDKSLSGEKNVLIF 198
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 160 bits (388), Expect = 1e-39
Identities = 84/167 (50%), Positives = 108/167 (64%)
Frame = +1
Query: 241 PQQHKFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 420
P+ FDAKRLIGR ++D +VQ D+K +PF+VV KP ++V K E KTF EE+S+M
Sbjct: 761 PENTVFDAKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEISAM 820
Query: 421 VLTKMKETAEAYLGKTVQNAVITVPAYFNALKDKPQKMQVPSLA*TFSESSMNXXXXXXX 600
VLTKMKETAEAYLGK V +AV+TVPAYFN + + K ++A +N
Sbjct: 821 VLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATK-DAGAIAGLTVMRIINEPTAAAI 879
Query: 601 XXXXXXXXENEMYLSFDLGGGTFDVSILTIEDGIFEVKSTAGDTHFG 741
+ L FDLGGGTFDVS+LTI++G+FEV +T GDTH G
Sbjct: 880 AYGMDKKEGEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLG 926
Score = 104 bits (249), Expect = 9e-23
Identities = 48/61 (78%), Positives = 54/61 (88%), Gaps = 1/61 (1%)
Frame = +2
Query: 74 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNN 250
+GIDLGTTYSCVGVF++G+VEIIANDQGNR TPSYVAFT+ ERLIGD AKNQ+ NP N
Sbjct: 704 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQLTTNPEN 763
Query: 251 T 253
T
Sbjct: 764 T 764
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 134 bits (325), Expect = 5e-32
Identities = 61/66 (92%), Positives = 63/66 (95%)
Frame = +2
Query: 56 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 235
M KAPA+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD ERL+GDAAKNQVA
Sbjct: 1 MTKAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVA 60
Query: 236 MNPNNT 253
MNP NT
Sbjct: 61 MNPTNT 66
Score = 113 bits (273), Expect = 1e-25
Identities = 64/114 (56%), Positives = 73/114 (64%), Gaps = 25/114 (21%)
Frame = +1
Query: 241 PQQHKFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEV--- 411
P FDAKRLIGR+F+D V+ DMKHW FEVV++ G+PK+KV YKGE KTFF EEV
Sbjct: 63 PTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEVVNE 122
Query: 412 ----------------------SSMVLTKMKETAEAYLGKTVQNAVITVPAYFN 507
SSMVL KMKETAEAYLG V +AV+TVPAYFN
Sbjct: 123 AGRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFN 176
Score = 100 bits (240), Expect = 1e-21
Identities = 56/112 (50%), Positives = 65/112 (58%)
Frame = +1
Query: 406 EVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNALKDKPQKMQVPSLA*TFSESSMNXX 585
++SSMVL KMKETAEAYLG V +AV+TVPAYFN + + K
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFNDSQRQATKDAGVISGLNVLRIINEPT 270
Query: 586 XXXXXXXXXXXXXENEMYLSFDLGGGTFDVSILTIEDGIFEVKSTAGDTHFG 741
+ L FDLGGGTFDVS+L+IEDGIFEVKST GDTH G
Sbjct: 271 AAAIAYGLDKKVGQERNVLIFDLGGGTFDVSVLSIEDGIFEVKSTHGDTHLG 322
Score = 83.4 bits (197), Expect = 2e-16
Identities = 42/46 (91%), Positives = 42/46 (91%)
Frame = +3
Query: 510 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIF 647
SQRQATKDAG ISGLNVLRIINEPTAAAIAYGLDKK ERNVLIF
Sbjct: 246 SQRQATKDAGVISGLNVLRIINEPTAAAIAYGLDKKVGQERNVLIF 291
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 77.0 bits (181), Expect = 2e-14
Identities = 53/168 (31%), Positives = 77/168 (45%), Gaps = 1/168 (0%)
Frame = +1
Query: 241 PQQHKFDAKRLIGRKFEDATVQADMKHWPFEVVSDG-GKPKIKVAYKGEDKTFFPEEVSS 417
P+ +DAKR IG+ F + K + F V +D G V KG PEE+
Sbjct: 92 PKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEIGG 151
Query: 418 MVLTKMKETAEAYLGKTVQNAVITVPAYFNALKDKPQKMQVPSLA*TFSESSMNXXXXXX 597
V+ K++ AE L TV AV++VPA F+ +K + ++ SLA +N
Sbjct: 152 YVIKKLRTMAERNLTTTVTKAVMSVPAEFD-IKQRNATVKAASLAGITVLRVINEPTAAA 210
Query: 598 XXXXXXXXXENEMYLSFDLGGGTFDVSILTIEDGIFEVKSTAGDTHFG 741
+ DLGGGT DVS+L I+ G+F + AG+ G
Sbjct: 211 LAYGLHKKEGVANVMVVDLGGGTLDVSLLNIQGGMFVTMAMAGNNRLG 258
Score = 69.7 bits (163), Expect = 2e-12
Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Frame = +2
Query: 62 KAPAVGIDLGTTYSCVGVFQ--HGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 235
K +GIDLGTTYSCVG +Q G+++I +++ ++ PS VAFTD L+G+ A +Q
Sbjct: 30 KPKIIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGVLVGEKALSQAE 89
Query: 236 MNPNNT 253
+NP NT
Sbjct: 90 INPKNT 95
Score = 54.4 bits (125), Expect = 9e-08
Identities = 26/44 (59%), Positives = 34/44 (77%)
Frame = +3
Query: 513 QRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLI 644
QR AT A +++G+ VLR+INEPTAAA+AYGL KK G NV++
Sbjct: 184 QRNATVKAASLAGITVLRVINEPTAAALAYGLHKK-EGVANVMV 226
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 70.9 bits (166), Expect = 1e-12
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +1
Query: 265 KRLIGRKFEDATVQADMKHWPFEVVS-DGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKE 441
KR IGRKF D VQ ++ H P++VV I+V Y G+ + F PE+V +M+ T++K
Sbjct: 127 KRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVMAMLFTRLKT 186
Query: 442 TAEAYLGKTVQNAVITVPAYF 504
TAE L V + VI+VP+Y+
Sbjct: 187 TAEIALKTKVTDCVISVPSYY 207
Score = 49.6 bits (113), Expect = 3e-06
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +2
Query: 74 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 229
VG D+G + V + G +E +AN+ +R TPS+V+ D +RLIG + KNQ
Sbjct: 4 VGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSLGDKQRLIGTSGKNQ 55
Score = 38.7 bits (86), Expect = 0.005
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 513 QRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKK 617
QR+ DA +GLN LR++N+ TA ++AYG+ K+
Sbjct: 211 QRRCMLDASATAGLNCLRLMNDTTAVSLAYGIYKQ 245
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 57.6 bits (133), Expect = 1e-08
Identities = 26/49 (53%), Positives = 38/49 (77%)
Frame = +1
Query: 361 IKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFN 507
I V GE ++F PE++S++VL ++K AEA+LG+ V+ AVITVPA+FN
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVPAHFN 50
Score = 48.0 bits (109), Expect = 8e-06
Identities = 36/68 (52%), Positives = 39/68 (57%), Gaps = 26/68 (38%)
Frame = +3
Query: 510 SQRQATKDAGTISGLNVL------------------------RIINEPTAAAIAYGLDKK 617
+QRQATKDAGTI+GL+VL RIINEPTAAAIAYGLDK
Sbjct: 52 AQRQATKDAGTIAGLDVLSRTASERPPSRFRRRRPHGRSRVLRIINEPTAAAIAYGLDKA 111
Query: 618 --GTGERN 635
G ERN
Sbjct: 112 RGGKAERN 119
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 54.4 bits (125), Expect = 9e-08
Identities = 22/32 (68%), Positives = 28/32 (87%)
Frame = +1
Query: 646 FDLGGGTFDVSILTIEDGIFEVKSTAGDTHFG 741
+DLGGGTFD+SIL I+ G+FEVK+T GDT+ G
Sbjct: 5 YDLGGGTFDISILEIQKGVFEVKATNGDTYLG 36
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +2
Query: 125 GKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTN---SMPNVSSDVSSKM 295
G IIAND G+R TP+ VAF+DTE+LI + N N S V + + KM
Sbjct: 83 GNTTIIANDAGDRVTPAMVAFSDTEKLIDKDGLPYYEVESNERNIQVSPKEVINMIYKKM 142
Query: 296 L 298
L
Sbjct: 143 L 143
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +1
Query: 355 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFN 507
P +K Y+ D TF PEE+ M+L + E + +++ V+TVP +FN
Sbjct: 68 PHVK-NYQQSDVTFTPEELMGMILNHSRFIGEQFADHPIKDVVLTVPPFFN 117
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +3
Query: 510 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGL 608
++R+A A + GLNVL+I+N TA A+ YGL
Sbjct: 119 AERRALLRAAELVGLNVLQIMNSNTAVALNYGL 151
>SB_47707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 627
Score = 34.3 bits (75), Expect = 0.11
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +3
Query: 420 GAYENEG-NCRSLSWQNCAECSYHGSRVLQCSQRQAT--KDAGTISGLNVLRIINEPTAA 590
GA +N + SL W C + YHG +V++C+ A AG S NV+R + P A
Sbjct: 512 GATQNANESLNSLVWARCPKHKYHGYKVIRCAVAAAVCHFHAGASSRENVMRRLCVP-AG 570
Query: 591 AIAYGLDKKGTG 626
G K TG
Sbjct: 571 HTQEGHPSKRTG 582
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 31.1 bits (67), Expect = 0.99
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +2
Query: 134 EIIANDQGNRTTPSYVAFT-DTERL 205
++I N +G+RTTPS VAFT + ERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 30.3 bits (65), Expect = 1.7
Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 1/142 (0%)
Frame = -2
Query: 716 DFTSKIPSSMVRMDTSKVPPPRSKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGT 537
+ T +PS+ V +T+ +P P + + S +V ++ SS + S T
Sbjct: 96 NITMILPSTSVPYNTTLIPAPNATSTAATTMSPSYVANMTTLDSSVSLTRSSL-----ST 150
Query: 536 CIFCGLSLRALKYAGTVI-TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLI 360
+ +S L Y TVI T T L + S + VS + TSS + + + + +++
Sbjct: 151 TLIPSISTSILPYNTTVIATPNTTRLVTSTISSSTVNVSAISTTSSIESTIMASVASSIQ 210
Query: 359 LGLPPSLTTSKGQCFMSACTVA 294
L + + T + + T A
Sbjct: 211 LNITSNTTMAVNDTLRTTSTSA 232
Score = 29.9 bits (64), Expect = 2.3
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 1/140 (0%)
Frame = -2
Query: 710 TSKIPSSMVRMDTSKVPPPRSKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCI 531
T +PS+ V +T+ +P P + + S +V ++ SS + S T +
Sbjct: 299 TMILPSTSVPYNTTLIPAPNATSTAATTMSPSYVANMTTLDSSVSLTRSSL-----STTL 353
Query: 530 FCGLSLRALKYAGTVI-TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILG 354
+S L Y TVI T T L + S + VS + TSS + + + + +++ L
Sbjct: 354 IPSISTSILPYNTTVIATPNTTRLVTSTISSSTVNVSAISTTSSIESTIMASVASSIQLN 413
Query: 353 LPPSLTTSKGQCFMSACTVA 294
+ + T + + T A
Sbjct: 414 ITSNTTMAVNDTLRTTSTSA 433
Score = 29.9 bits (64), Expect = 2.3
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 4/149 (2%)
Frame = -2
Query: 710 TSKIPSSMVRMDTSKVPPPRSKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCI 531
T +PS+ V +T+ +P P + + S +V ++ SS + ++ T +
Sbjct: 701 TMILPSTSVPYNTTLIPAPNATSTAATTMSPSYVANMTTLDSSVSL-----TRSLLSTTL 755
Query: 530 FCGLSLRALKYAGTVITAFCTVLPR*ASAVSFIFVSTME---LTSSGKKVLSSPLYATLI 360
+S L Y TVI T A S I +S++ T S V + + T I
Sbjct: 756 IPSISTSILPYNTTVIATPNTT----RIATSVILLSSLNDTIRTRSTSVVFETTMKRTQI 811
Query: 359 -LGLPPSLTTSKGQCFMSACTVASSNLRP 276
G PP +T+S +SA +V + P
Sbjct: 812 TTGYPPLMTSSAVASSISATSVVVDSTTP 840
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 30.3 bits (65), Expect = 1.7
Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 1/140 (0%)
Frame = -2
Query: 710 TSKIPSSMVRMDTSKVPPPRSKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCI 531
T +PS+ V +T+ +P P + + S +V ++ SS + S T +
Sbjct: 209 TMILPSTSVPYNTTLIPGPNATSTAATTMSPSYVANMTTLDSSVSLTRSSL-----STTL 263
Query: 530 FCGLSLRALKYAGTVI-TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILG 354
+S L Y TVI T T L + S + VS + TSS + + + + +++ L
Sbjct: 264 IPSISTSILPYNTTVIATPNTTRLVTSTISSSTVNVSAISTTSSIESTIMASVASSIQLN 323
Query: 353 LPPSLTTSKGQCFMSACTVA 294
+ + T + T A
Sbjct: 324 ITSNTTVEVNDTLRTTSTTA 343
Score = 28.3 bits (60), Expect = 7.0
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 1/140 (0%)
Frame = -2
Query: 710 TSKIPSSMVRMDTSKVPPPRSKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCI 531
T PS+ V +T+ +P P + + S +V ++ SS + ++ T +
Sbjct: 8 TMIFPSTSVPYNTTLIPAPNATSTAATTMSPSYVANMTTLDSSVSL-----ARSLLSTTL 62
Query: 530 FCGLSLRALKYAGTVI-TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILG 354
+S L Y TVI T T L + S + VS + TSS + + + + +++ L
Sbjct: 63 IPSISTSILPYNTTVIATPNTTRLVTSTISSSTVNVSVISTTSSIESTIMASVASSIQLN 122
Query: 353 LPPSLTTSKGQCFMSACTVA 294
+ + T + + T A
Sbjct: 123 ITSNTTMAVNDTLRTTSTSA 142
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 29.9 bits (64), Expect = 2.3
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 1/140 (0%)
Frame = -2
Query: 710 TSKIPSSMVRMDTSKVPPPRSKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCI 531
T +PS+ V +T+ +P P + + S +V ++ SS + S T +
Sbjct: 98 TMILPSTSVPYNTTLIPAPNATSTAATTMSPSYVANMTTLDSSVSLTRSSL-----STTL 152
Query: 530 FCGLSLRALKYAGTVI-TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILG 354
+S L Y TVI T T L + S + VS + TSS + + + + +++ L
Sbjct: 153 IPSISTSILPYNTTVIATPNTTRLVTSTISSSTVNVSAISTTSSIESTIMASVASSIQLN 212
Query: 353 LPPSLTTSKGQCFMSACTVA 294
+ + T + + T A
Sbjct: 213 ITSNTTMAVNDTLRTTSTSA 232
Score = 29.5 bits (63), Expect = 3.0
Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 1/140 (0%)
Frame = -2
Query: 710 TSKIPSSMVRMDTSKVPPPRSKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCI 531
T +PS+ V +T+ +P P + + S +V ++ SS + S T +
Sbjct: 299 TMILPSTSVPYNTTLIPAPNATSTAATTMSPSYVANMTTLDSSVSLTRSSL-----STTL 353
Query: 530 FCGLSLRALKYAGTVI-TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILG 354
+S L Y TVI T T L + S + VS + TSS + + + +++ L
Sbjct: 354 IPSISTSILPYNTTVIATPNTTRLVTSTISSSTVNVSAISTTSSIESTIMESVASSIQLN 413
Query: 353 LPPSLTTSKGQCFMSACTVA 294
+ + T + + T A
Sbjct: 414 ITSNTTMAVNDTLTTTSTSA 433
Score = 29.5 bits (63), Expect = 3.0
Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 1/138 (0%)
Frame = -2
Query: 710 TSKIPSSMVRMDTSKVPPPRSKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCI 531
T +PS+ V +T+ +P P + + S +V ++ SS + ++ T +
Sbjct: 902 TMILPSTSVPYNTTLIPGPNATSTAATTMSPTYVANMTTLDSSVSL-----TRSLLSTTL 956
Query: 530 FCGLSLRALKYAGTVI-TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILG 354
+S L Y TVI T T L + S + VS + TSS + + + + +++ L
Sbjct: 957 IPSISTSILPYNTTVIATPNTTRLVTSMISSSTVNVSAISTTSSIESTIMASVASSIQLN 1016
Query: 353 LPPSLTTSKGQCFMSACT 300
+ + T + +A T
Sbjct: 1017 ITSNTTMAVNDTLRTAST 1034
Score = 29.5 bits (63), Expect = 3.0
Identities = 31/140 (22%), Positives = 60/140 (42%), Gaps = 1/140 (0%)
Frame = -2
Query: 710 TSKIPSSMVRMDTSKVPPPRSKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCI 531
T +PS+ V +T+ +P P + + S +V ++ SS + ++ T +
Sbjct: 1103 TMILPSTSVPYNTTLIPAPNATSTAATTMSPSYVANMTTLDSSVSL-----TRSLLSTTL 1157
Query: 530 FCGLSLRALKYAGTVI-TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILG 354
+S L Y TVI T T L + S + VS + TSS + + + + +++ L
Sbjct: 1158 IPSISTSMLPYNTTVIATPNTTRLATSTISSSTVNVSAISTTSSIESTIMASVASSIQLN 1217
Query: 353 LPPSLTTSKGQCFMSACTVA 294
+ + T + + T A
Sbjct: 1218 ITSNTTMAVNDTLRTTSTSA 1237
Score = 29.5 bits (63), Expect = 3.0
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 1/140 (0%)
Frame = -2
Query: 710 TSKIPSSMVRMDTSKVPPPRSKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCI 531
T +PS+ V +T+ +P P + + S +V ++ SS + S T +
Sbjct: 1304 TMILPSTSVPYNTTLIPGPNATSTAATTMSPSYVANMTTLDSSVSLTRSSL-----STTL 1358
Query: 530 FCGLSLRALKYAGTVI-TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILG 354
+S L Y TVI T T L + S + VS + TSS + + + + +++ L
Sbjct: 1359 IPSISTSILPYNTTVIATPNTTRLVTSTISSSTVNVSAISTTSSIESTIMASVASSIQLN 1418
Query: 353 LPPSLTTSKGQCFMSACTVA 294
+ + T + + T A
Sbjct: 1419 ITSNTTMAVNDTLRTTSTSA 1438
Score = 29.1 bits (62), Expect = 4.0
Identities = 31/140 (22%), Positives = 60/140 (42%), Gaps = 1/140 (0%)
Frame = -2
Query: 710 TSKIPSSMVRMDTSKVPPPRSKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCI 531
T +PS+ V +T+ +P P + + S +V ++ SS + ++ T +
Sbjct: 701 TMILPSTSVPYNTTFIPAPNATSTAATTMSPSYVANMTTLDSSVSL-----TRSLLSTTL 755
Query: 530 FCGLSLRALKYAGTVI-TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILG 354
+S L Y TVI T T L + S + VS + TSS + + + + +++ L
Sbjct: 756 IPSISTSILPYNTTVIATPNTTRLATSTISSSTVNVSAISTTSSIESTIMASVASSIQLN 815
Query: 353 LPPSLTTSKGQCFMSACTVA 294
+ + T + + T A
Sbjct: 816 ITSNTTMAVNDTLRTTSTSA 835
Score = 28.7 bits (61), Expect = 5.3
Identities = 31/140 (22%), Positives = 61/140 (43%), Gaps = 1/140 (0%)
Frame = -2
Query: 710 TSKIPSSMVRMDTSKVPPPRSKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCI 531
T +PS+ V +T+ +P P + + S +V ++ SS + + ++ + T +
Sbjct: 500 TMILPSTSVPYNTTFIPSPNATSTAATTMSPSYVSNMTTLDSS--VSFTRSLLS---TTL 554
Query: 530 FCGLSLRALKYAGTVI-TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILG 354
+S L Y TVI T T L + S + VS + TSS + + + +++ L
Sbjct: 555 IPSISTSILPYNTTVIATPNTTRLVTSTISSSTVNVSAISTTSSIESTIMESVASSIQLS 614
Query: 353 LPPSLTTSKGQCFMSACTVA 294
+ + T + + T A
Sbjct: 615 ITSNTTMAVNDTLKTTSTSA 634
>SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3)
Length = 350
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -2
Query: 242 GSSPPGSWRHLR*DARCL*TQHKTEWSCCPGRW 144
GS PPG W R +AR T +T +SC PG W
Sbjct: 206 GSCPPGFWCRKRREARAA-TDLET-YSCPPGFW 236
>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
Length = 1233
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/72 (23%), Positives = 29/72 (40%)
Frame = +2
Query: 95 TYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTNSMPNVS 274
T++ + H I+ N G +TP + T A + + M P N V+
Sbjct: 559 THTTTSITLHPSSAILDNSLGPASTPRTTISSTTHVSSTPIASSSMVMTPTAINPSATVT 618
Query: 275 SDVSSKMLLCKP 310
+ V S ++ KP
Sbjct: 619 TTVPSTSVVVKP 630
>SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 833
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 650 TSAAVPSTCPSLPSRMVSSR*NPPPATP 733
T A P P++PSR +R PPP P
Sbjct: 784 TKPATPRVPPNIPSRPPGARPTPPPPPP 811
>SB_27085| Best HMM Match : Filamin (HMM E-Value=1.5)
Length = 634
Score = 28.7 bits (61), Expect = 5.3
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +1
Query: 646 FDLGGGTFDVSILTIEDGIFEVK 714
+DLG GT++++IL E G++ ++
Sbjct: 322 YDLGNGTYEMAILFHEPGVYSIR 344
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 2 HVC*VVLRTSNKTD*KYKMAKAPAVGIDL 88
HVC +V T K K ++K PA GI+L
Sbjct: 1200 HVCNIVSNTETKITCKLDVSKTPAPGIEL 1228
>SB_41920| Best HMM Match : Filamin (HMM E-Value=0.00015)
Length = 600
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 646 FDLGGGTFDVSILTIEDGIFEV 711
FDLG G+++V L +E G++ V
Sbjct: 312 FDLGNGSYEVLFLVMEPGVYRV 333
>SB_51476| Best HMM Match : Ion_trans (HMM E-Value=6.29996e-41)
Length = 823
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = -2
Query: 743 LPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSKDKYISFSSTLFVKTVSNRSSSRFIDDS 564
L + +SP V K P + K+ P D +SF++TLF R+S + + +
Sbjct: 471 LLRQMSPPVGIGKKCPKIVAYKRLIKMNMPLYNDNTVSFTATLFSLV---RTSLKIMTEK 527
Query: 563 ENVQARD 543
N++ D
Sbjct: 528 NNLREND 534
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -2
Query: 449 SAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSACTVASSNLRP 276
S F+F ST + +S +KV+ SPL + + P+ G S C V + + P
Sbjct: 1108 SPAKFVFTSTGIVRASTRKVVPSPLRRSKVPPTVPAQRLFNGDRVESICNVQNLSRCP 1165
>SB_57471| Best HMM Match : TatC (HMM E-Value=0.27)
Length = 687
Score = 27.9 bits (59), Expect = 9.2
Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 2/137 (1%)
Frame = -2
Query: 719 VDFTSKIPSSMVRMDTSKVPPPRSKDKYISFSSTLFVKTVSNRSSS--RFIDDSENVQAR 546
+D TS+ PS+ V +T+ P P + Y T +S R++S SE++
Sbjct: 564 IDDTSRTPSASVAFETTITPSP-NVTSYQPLLMTSSAVAISTRAASIATIASSSEHISTW 622
Query: 545 DGTCIFCGLSLRALKYAGTVITAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYAT 366
G+ L L + ++ R VSF VS+ ++ KV SS
Sbjct: 623 TGSLAL--LYTERLTTRAIPADSASSLAARVTFVVSFSLVSSFDV-----KVSSS----- 670
Query: 365 LILGLPPSLTTSKGQCF 315
+L LPP++ S F
Sbjct: 671 -VLPLPPNIGMSSNVVF 686
>SB_45916| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1774
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -2
Query: 644 DKYISFSSTLFVKTVSNRSSSRFIDDSEN 558
+K ISF +LF+ VSN S+ R+I +E+
Sbjct: 752 NKVISFGPSLFMDKVSNASAGRYICIAES 780
>SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)
Length = 933
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 352 KPKIKVA-YKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNALKDKPQ 528
+P K A Y +D+T E + + LT + ++ NAV P Y++ L+DKP
Sbjct: 435 RPADKQAEYLEDDETDGFESGALLNLTPARSRNPVQRNESYCNAVSRSPGYYSPLRDKPA 494
Query: 529 K 531
+
Sbjct: 495 R 495
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,035,564
Number of Sequences: 59808
Number of extensions: 599037
Number of successful extensions: 2045
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2037
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -