Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0754.Seq
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084197-1|AAG23478.1|  328|Caenorhabditis elegans Serpentine re...    31   0.78 
AC199172-3|ABO33274.1|  306|Caenorhabditis elegans F-box a prote...    28   7.2  

>AC084197-1|AAG23478.1|  328|Caenorhabditis elegans Serpentine
           receptor, class v protein24 protein.
          Length = 328

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 23/70 (32%), Positives = 36/70 (51%)
 Frame = +3

Query: 3   FFCLLHIYSNQYSYNVTFYI*TMPIQNNLSTNTYIITN*FSFLHCKLNNLIYFHKFVFYT 182
           F CLL +     SYN TFY  ++ +Q+ +     II   FS L+  L N++   +F+F  
Sbjct: 19  FGCLLRLRCVSRSYNTTFY--SILLQHCI---VDIIAMTFSILNTGLRNILVIRQFMF-- 71

Query: 183 IIKYNENYLS 212
              Y + YL+
Sbjct: 72  --NYQDYYLA 79


>AC199172-3|ABO33274.1|  306|Caenorhabditis elegans F-box a protein
           protein 31 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 190 FMMV*KTNLWK*IKLFSLQCKKLNQLVIMYVFVLKLFCI 74
           F ++   + WK  K+FS +   LN   I Y+F  + FCI
Sbjct: 180 FELITYLDQWKNSKIFSFRDSSLNCEYIEYLFHFEEFCI 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,793,098
Number of Sequences: 27780
Number of extensions: 303568
Number of successful extensions: 514
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)