Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0750.Seq
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    27   2.8  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    26   4.8  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   6.4  
SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr...    25   8.5  

>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 437 HGTHY*TKV-Q*MNHSNNVKYSKKQATYFSKAISNVFENFT 318
           HG HY   V   +  + N   +KK+  Y + AI+  F NF+
Sbjct: 145 HGWHYRRYVVSQIERAGNCSLAKKEMEYTTSAIATNFSNFS 185


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 732 PKLNNNKLPSLISKYFIRERVASSVTNLYEIC*IV 628
           P L +N   ++ISKYFIRE   S++ +   +  +V
Sbjct: 366 PSLGDNS-NTIISKYFIREITESNIVHFKRLVRVV 399


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 32   EALKEMLVIYNNNLYCQIKL*IFFLSNVMSMTFQ 133
            E+L+   V++N N+YCQ+   +  L  + +  FQ
Sbjct: 1206 ESLEYRFVLHNANVYCQLGCDLIALGLLRNWKFQ 1239


>SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 184

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/14 (64%), Positives = 14/14 (100%)
 Frame = -1

Query: 125 SLTSHYLRKIFTIL 84
           SL+SHYLR++F++L
Sbjct: 23  SLSSHYLRRMFSLL 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,320
Number of Sequences: 5004
Number of extensions: 59868
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)