Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0750.Seq
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0358 - 28677781-28677901,28678327-28678430,28678542-286786...    28   8.8  

>01_06_0358 -
           28677781-28677901,28678327-28678430,28678542-28678625,
           28679221-28679265,28679523-28679594,28679721-28679759,
           28679966-28680061,28680492-28680566,28681717-28681764,
           28681888-28681971,28682141-28682341,28682394-28682561,
           28683232-28683372,28683470-28683517,28683845-28684087,
           28684184-28684297,28685134-28685163,28685361-28685951,
           28686033-28686620,28686744-28686863,28687764-28687938,
           28688397-28688562,28688653-28688755,28689227-28689319,
           28690759-28690918,28691754-28691872
          Length = 1275

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -3

Query: 546 RNDRLFNSNEISQFFSSLN 490
           RN RLF+S+ +SQF  SLN
Sbjct: 160 RNRRLFDSSRLSQFHPSLN 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,883,699
Number of Sequences: 37544
Number of extensions: 287213
Number of successful extensions: 389
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)