Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0750.Seq
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04040.1 68417.m00574 pyrophosphate--fructose-6-phosphate 1-p...    28   7.4  
At2g19550.1 68415.m02284 esterase/lipase/thioesterase family pro...    28   7.4  
At4g17610.1 68417.m02633 tRNA/rRNA methyltransferase (SpoU) fami...    27   9.8  

>At4g04040.1 68417.m00574 pyrophosphate--fructose-6-phosphate
           1-phosphotransferase beta subunit, putative /
           pyrophosphate-dependent 6-phosphofructose-1-kinase,
           putative strong similarity to SP|Q41141
           Pyrophosphate--fructose 6-phosphate 1-phosphotransferase
           beta subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase,
           pyrophosphate-dependent) (Pyrophosphate-dependent
           6-phosphofructose-1-kinase) (PPI-PFK) {Ricinus communis}
          Length = 585

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/29 (37%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = -3

Query: 168 IFDKKITSKSVT*NVIDITLLK-KNIHNF 85
           +F+KK+T K+VT N++D+   + +N +N+
Sbjct: 318 VFEKKLTLKNVTDNIVDVIYKRAENGYNY 346


>At2g19550.1 68415.m02284 esterase/lipase/thioesterase family
           protein low similarity to cinnamoyl ester hydrolase CinI
           [Butyrivibrio fibrisolvens] GI:1622732; contains
           esterase/lipase/thioesterase active site serine
           (PS50187) (Interpro entry IPR000379) and alpha/beta
           hydrolase fold (PF00561).
          Length = 332

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 95  IFFLSNVMSMTFQVTDLEVIFLSKIRSL*CTWILCLE 205
           IF L NVMS   Q+  L   +L +I+ L   W+L LE
Sbjct: 293 IFKLENVMSRIQQLIYLIFFYLLRIKLLLGLWLLLLE 329


>At4g17610.1 68417.m02633 tRNA/rRNA methyltransferase (SpoU) family
            protein similar to TAR RNA loop binding protein [Homo
            sapiens] GI:1184692; contains Pfam profile PF00588: SpoU
            rRNA Methylase (RNA methyltransferase, TrmH) family
          Length = 1850

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -3

Query: 318  SQQPNLPNLNA*RHIYILSIYLKTVCVVWDQLTQTIVNSRHKIQVHYK 175
            +++ NLP +      + ++IYLK   +V +QL   + N   K QV+ +
Sbjct: 1404 TERNNLPAVRQYLETFAINIYLKFPALVKEQLVPILKNYDSKAQVNLR 1451


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,042,460
Number of Sequences: 28952
Number of extensions: 270912
Number of successful extensions: 425
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)