Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0749.Seq
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    58   1e-09
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    52   9e-08
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    29   0.56 
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    29   0.56 
SPAC29B12.04 |snz1||pyridoxine biosynthesis protein|Schizosaccha...    28   1.7  
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe...    27   2.3  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    27   3.0  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    27   3.0  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.2  
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    26   6.9  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    26   6.9  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    25   9.1  

>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 30/66 (45%), Positives = 36/66 (54%)
 Frame = +1

Query: 508 VEETVQINNGLKPKY*AHHDVRYTXXXXXXXXXXXXXYINDRHLPDKAIDVIDEAGARAR 687
           V +T+ I  GLK +Y  HH VR T             YI DR LPDKAID++DEA +  R
Sbjct: 276 VADTISILRGLKERYEVHHGVRITDDALVTAATYSARYITDRFLPDKAIDLVDEACSSLR 335

Query: 688 LMPVSK 705
           L   SK
Sbjct: 336 LQQESK 341



 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 19/37 (51%), Positives = 25/37 (67%)
 Frame = +2

Query: 398 GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPS 508
           GK+   G+TT +E+    EKD ALARRFQ + + EPS
Sbjct: 239 GKLHCCGATTLEEYRKYIEKDAALARRFQAVMVNEPS 275


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 52.0 bits (119), Expect = 9e-08
 Identities = 24/61 (39%), Positives = 32/61 (52%)
 Frame = +1

Query: 508 VEETVQINNGLKPKY*AHHDVRYTXXXXXXXXXXXXXYINDRHLPDKAIDVIDEAGARAR 687
           +E+T+ I  GLK KY  HH V  +             Y+  R LPD AID++DEA A  R
Sbjct: 347 IEDTISILRGLKEKYEVHHGVTISDRALVTAAHLASRYLTSRRLPDSAIDLVDEAAAAVR 406

Query: 688 L 690
           +
Sbjct: 407 V 407



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/43 (46%), Positives = 25/43 (58%)
 Frame = +2

Query: 380 KTLQFSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPS 508
           K +   GK+  IG+TT  E+    EKD A  RRFQ I + EPS
Sbjct: 304 KPMLARGKLHCIGATTLAEYKKYIEKDAAFERRFQIILVKEPS 346


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 358 VRNVHHVHVWMVGE-KPVMTLHVQVIPPHD 272
           V +VH +H+W + + K + T+HV V  P D
Sbjct: 315 VESVHELHIWQLSDVKLIATVHVCVTLPDD 344


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1151

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 53   LLRSTAAGCG-STAHVKEAHARCPINGDDVNGQTPLHSGGSLAHDKV 190
            LL  TAA CG S A     +A C +N  D  G TPLH      H  +
Sbjct: 865  LLHLTAA-CGLSNASTFLCNAGCDVNKRDALGYTPLHYASLYDHKDI 910


>SPAC29B12.04 |snz1||pyridoxine biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 311 GDDVACAGDPATRSRCLVGQIQHY 240
           G  +  +GDPA R+R +V  + HY
Sbjct: 237 GSGIFLSGDPAKRARAIVRAVTHY 260


>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 235 WITIRLSTPPFRWNINLVMGQT 170
           WIT  L+ P   WN  ++M  T
Sbjct: 69  WITFLLNVPMLAWNAKMIMSNT 90


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 259 TRHRDRVAGSPAHATSSPASRL 324
           T HR +  GS +H T+SP S+L
Sbjct: 48  TEHRKKPTGSGSHITASPWSKL 69


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -3

Query: 412 YTNFTAELKRLMCREIPEV 356
           +T F AELK+L+CR+ P+V
Sbjct: 155 FTQF-AELKKLLCRQAPDV 172


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -1

Query: 285 SRHTITMPCWTDPTLPDGSLSD*ARHHSDGISTLSWARLPPE*RGVWPFTSS 130
           S+ +I +P   DPT PD    D   H S  + +LS      + +  W + SS
Sbjct: 314 SKRSIMLPQDIDPTFPDSEPED-DGHASSTVGSLSKEEARFKAKAKWNYKSS 364


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +2

Query: 311 RLLAYHPYMYM--VHIADFR-DFPAHKTLQFSGKIRVIGSTTYQEFSNIFEKDRALARRF 481
           R+L +H    +  V   +++ D   H+ +    +  +     YQ+++ I  K R LA R 
Sbjct: 2   RILKHHEQKLLRKVDFLNYKNDDNNHRDVMVMRRYHISKREEYQKYNIICGKFRQLAHRL 61

Query: 482 QKIDITEP 505
             +D T+P
Sbjct: 62  SLLDPTDP 69


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 39  HHPDLYCAQRQPDVDQQRT*KRLTRAVPL 125
           HHPDL   +RQP +   +  +R     P+
Sbjct: 4   HHPDLVLCRRQPGITVGKLCERCDEKCPI 32


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 350 IADFRDFPAHKTLQFSGKIRVIGSTTYQ 433
           I +  D P+ +T+Q  GKIRV+ S  ++
Sbjct: 489 IDENEDEPSVQTIQLQGKIRVVPSKPFK 516


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,363,329
Number of Sequences: 5004
Number of extensions: 70925
Number of successful extensions: 166
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)