Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0749.Seq
         (774 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21151| Best HMM Match : AAA_2 (HMM E-Value=0)                       65   7e-11
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_39920| Best HMM Match : K_tetra (HMM E-Value=1.9e-06)               29   5.5  
SB_31893| Best HMM Match : I-set (HMM E-Value=2e-22)                   28   9.6  

>SB_21151| Best HMM Match : AAA_2 (HMM E-Value=0)
          Length = 373

 Score = 64.9 bits (151), Expect = 7e-11
 Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
 Frame = +1

Query: 502 TVVEETVQINNGLKPKY*AHHDVRYTXXXXXXXXXXXXXYINDRHLPDKAIDVIDEAGAR 681
           T VEET+QI + +K KY  HH+V +T             Y+ DR+LPDKAID +DEAG+R
Sbjct: 44  TTVEETIQILHNIKEKYEEHHNVDFTDDAIEACVKLTNRYMTDRYLPDKAIDALDEAGSR 103

Query: 682 ARLMPVSKRKKTVNV-ADIESVVA 750
             +  +   ++ + + A++E++ A
Sbjct: 104 IHITNIVVPQQVLALEAELENIRA 127



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/38 (50%), Positives = 27/38 (71%)
 Frame = +2

Query: 398 GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSS 511
           G+++ IG+TT  E+    EKD AL RRFQK+ I EP++
Sbjct: 9   GEVQCIGATTLDEYRTNIEKDGALERRFQKV-IVEPTT 45


>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3474

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = +3

Query: 180 MTRLIFHLNGGVLNLIVIHQVVLDLSNKAS*SCGGITCTCNVITGFSPTIHTCTWCTLRT 359
           MT  I  L  G+L+L+V H V  +     +    G+ C C  I G    +H C   ++  
Sbjct: 1   MTSTIHILTLGLLSLLVGHSVGQERLTNGTACTTGLNCLCEGIPGVDFRVH-CRLNSIDV 59

Query: 360 SGISRHI 380
            G+   I
Sbjct: 60  DGLMAQI 66


>SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 363

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = -3

Query: 610 PVLPPHAPLLRYNARRGALN-TSVSGHC*FEQFLRRRFSNINFLEATRQSTVFLENVAEL 434
           P+  P    L+  ARR + N T  + +C  +    RRF  +   +A  QST  +E     
Sbjct: 57  PMYFPLGQGLQLKARRWSTNRTECAIYCKGKDENLRRFEGLQCGQAVWQSTANIEEQDRY 116

Query: 433 LIGCRTNYTNFTAEL 389
           +    TNY  F  EL
Sbjct: 117 VKRIATNYVMFENEL 131


>SB_39920| Best HMM Match : K_tetra (HMM E-Value=1.9e-06)
          Length = 270

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 391 LKRLMCREIPEVRNVHHVHVWMVGEKPVMTLHVQVI 284
           L  L+ +EIP  +N+    +W + E P  +LH  +I
Sbjct: 79  LPTLLEKEIPSPKNMLQRKIWQMLENPESSLHATII 114


>SB_31893| Best HMM Match : I-set (HMM E-Value=2e-22)
          Length = 767

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = -1

Query: 192 STLSWARLPPE*RGVWPFTSSPLMGQRA*ASFTCAVDPHPAAVERNKGQDDVLQRHGVNA 13
           STL +++  PE  G W F +   MG  A A+    V   P  +E+   +    Q      
Sbjct: 371 STLGFSKAQPEDSGTWVFNAKNAMGS-ARAATDIIVATKPKFIEKPPSKVTAFQSTSTK- 428

Query: 12  LKCK 1
           L+CK
Sbjct: 429 LECK 432


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,710,681
Number of Sequences: 59808
Number of extensions: 609481
Number of successful extensions: 1636
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1632
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)