Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0749.Seq
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.     31   1.2  
AF016425-4|AAB65339.1|  518|Caenorhabditis elegans Hypothetical ...    29   4.9  
AC006769-9|AAF60585.2|  779|Caenorhabditis elegans Hypothetical ...    29   4.9  
AC006645-2|AAF39844.2|  796|Caenorhabditis elegans Hypothetical ...    29   4.9  
Z71185-2|CAA94904.2|  522|Caenorhabditis elegans Hypothetical pr...    28   8.5  
AF144639-1|AAD44756.1|  552|Caenorhabditis elegans sphingosine-1...    28   8.5  
AF100673-6|AAC69001.1|  552|Caenorhabditis elegans Sphingosine p...    28   8.5  

>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical
           protein K04B12.1 protein.
          Length = 1764

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 225 IVIHQVVLDLSNKAS*SCGGITCTCNVITGFSPTIHTCTWCTLRTS 362
           ++    V+D++N +  SC  +   C+     SP++ +C WC  + S
Sbjct: 689 LITRDSVIDIANVSLYSCTNLASDCSSCLALSPSL-SCGWCNRQCS 733


>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
          Length = 1766

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 225 IVIHQVVLDLSNKAS*SCGGITCTCNVITGFSPTIHTCTWCTLRTS 362
           ++    V+D++N +  SC  +   C+     SP++ +C WC  + S
Sbjct: 691 LITRDSVIDIANVSLYSCTNLASDCSSCLALSPSL-SCGWCNRQCS 735


>AF016425-4|AAB65339.1|  518|Caenorhabditis elegans Hypothetical
           protein F59A7.8 protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -1

Query: 276 TITMPCWTDPT-LPDGSLSD*ARHHSDGISTLSWARLPPE*RGV 148
           T T+P  TD T  PDG L D   H   G+  L W    P   G+
Sbjct: 124 THTIPAETDLTETPDGFLVDLMPHQKAGLCWLLWRESQPHSGGI 167


>AC006769-9|AAF60585.2|  779|Caenorhabditis elegans Hypothetical
           protein Y45G12C.11 protein.
          Length = 779

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -1

Query: 720 NGFLAFAYRHQACASARFVDNINGFIRQM--TIVNVFHRQFYRRTHRFCGITH 568
           NG+  FAY     A    ++++ G+      T+ N++ R  Y R H   G+T+
Sbjct: 545 NGY--FAYHCATLAKELGLNDVEGYFLMSDDTVFNIWQRIDYSRVHHLTGVTY 595


>AC006645-2|AAF39844.2|  796|Caenorhabditis elegans Hypothetical
           protein F56A4.6 protein.
          Length = 796

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -1

Query: 720 NGFLAFAYRHQACASARFVDNINGFIRQM--TIVNVFHRQFYRRTHRFCGITH 568
           NG+  FAY     A    ++++ G+      T+ N++ R  Y R H   G+T+
Sbjct: 562 NGY--FAYHCATLAKELGLNDVEGYFLMSDDTVFNIWQRIDYSRVHHLTGVTY 612


>Z71185-2|CAA94904.2|  522|Caenorhabditis elegans Hypothetical
           protein C35A5.2 protein.
          Length = 522

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -3

Query: 508 RRFSNINFLEATRQSTVFLENVAEL-LIGCRTNYTNFTAE 392
           R++ N+ +LE+T+   V+++   EL  +G  +NY+ F  E
Sbjct: 59  RKYENVKYLESTK-DIVYIQPSKELEALGFTSNYSKFWTE 97


>AF144639-1|AAD44756.1|  552|Caenorhabditis elegans
           sphingosine-1-phosphate lyase protein.
          Length = 552

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +3

Query: 276 CGGITCTCNVITGFSPTIHTCTWCTLRTSGISRHIRRFSSAVKFV*LVRQPI 431
           CGGI  T  +    +       W TL + G   ++RR +  VK   ++ + I
Sbjct: 377 CGGIYATPTIAGSRAGANTAVAWATLLSFGRDEYVRRCAQIVKHTRMLAEKI 428


>AF100673-6|AAC69001.1|  552|Caenorhabditis elegans Sphingosine
           phosphate lyase protein1 protein.
          Length = 552

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +3

Query: 276 CGGITCTCNVITGFSPTIHTCTWCTLRTSGISRHIRRFSSAVKFV*LVRQPI 431
           CGGI  T  +    +       W TL + G   ++RR +  VK   ++ + I
Sbjct: 377 CGGIYATPTIAGSRAGANTAVAWATLLSFGRDEYVRRCAQIVKHTRMLAEKI 428


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,188,871
Number of Sequences: 27780
Number of extensions: 443224
Number of successful extensions: 1293
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)