Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0746.Seq
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 31 0.12
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 30 0.27
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.48
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 27 1.9
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 27 2.5
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 26 4.4
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 26 4.4
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 26 5.9
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 26 5.9
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb... 25 7.8
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 25 7.8
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 31.5 bits (68), Expect = 0.12
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Frame = +3
Query: 234 MVSTYSSNQGNVINSRHSTFSLPRSTKSPTEISRSFLL----SNPIVSSLFIRFVLIFPS 401
+VSTYS++ N+ +S S ++ S+ PT ++ S L+ SN ++SS+ ++
Sbjct: 705 LVSTYSASLSNITHSSLSLTAMSSSSAIPTSVNSSTLITASSSNTLLSSITSSSAIV--- 761
Query: 402 RSSLVANR*YTVRQTLPSIT 461
S+ V+N + LPS T
Sbjct: 762 SSTTVSN----ISSNLPSAT 777
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 30.3 bits (65), Expect = 0.27
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = -1
Query: 484 KMARAGLLVIEGK-VWRTVYYRFATREEREGKMSTNLMNKLDTIGFDNKKDLLISVGDLV 308
+ A AGL++ K + + YRF ++ E + D G ++ L +S+ +L+
Sbjct: 229 EQAMAGLVIYFNKCLGNMLLYRFERQQYLEIRQQYPDTEMCDLYGVEHLIRLFVSLPELI 288
Query: 307 DRGN---ENVECL 278
DR N +++ECL
Sbjct: 289 DRTNMDSQSIECL 301
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.5 bits (63), Expect = 0.48
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +3
Query: 240 STYSSNQGNVINSRHSTFSLPRSTKSPTEISRSFLLSNPIVSS 368
S+ SS+Q +V ++ STFS + +PT S S+L S+ +VSS
Sbjct: 180 SSTSSSQPSVSSTSSSTFS----SAAPTSTSSSYLSSSSVVSS 218
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 522 LARQRPAHRSYYASPGNE*LPLCPSYTCSFQSELS 626
L+ +RPA S++++P N PL P+ T S LS
Sbjct: 191 LSNRRPALHSFHSAPANSLYPL-PTPTSQLPSNLS 224
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = -1
Query: 127 LKLLPIKQMNFR*SSNW*AKIKNMLSATPIIPLTN 23
++ + ++ FR ++ + KIK+++ TP+IP TN
Sbjct: 70 IREISVRGKYFRHANTFVEKIKDLIFKTPVIPETN 104
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 231 LMVSTYSSNQGNVINSRHSTFSLPRSTKSPT 323
++ S ++ + I+SRH+T SLP + +PT
Sbjct: 407 VLSSAFAKKREPSISSRHTTMSLPYLSYNPT 437
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 370 KLDTIGFDNKKDLLISVGDLVDRGNENVECL 278
KL +G + + +GD VDRG ++ECL
Sbjct: 129 KLFEVGGNPANTQYLFLGDYVDRGYFSIECL 159
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 588 KEAIIHYLGTHNSFCAPDVAALTGATVPA 502
K+ II Y+ + S AP+++A+ G+T A
Sbjct: 225 KQKIIEYVQSRISVVAPNLSAVVGSTTAA 253
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 282 HSTFSLPRSTKSPTEISRSFLLSNPIVSSLFIR 380
+ FSLPRS P ++ S LLS I+SS ++
Sbjct: 449 YKDFSLPRSLPRPFLLALSILLS--IISSFLVK 479
>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 7.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -3
Query: 386 HEPDEQTGYDWIRQQKRPAYL 324
H E+ GY+W+ + P YL
Sbjct: 575 HSVLEEIGYNWVDETNNPVYL 595
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -1
Query: 385 TNLMNKLDTIGFDNKKDLLISVGDLVDRGNENVECLELI 269
++L+ + GF + L +GD VDRG +++E + L+
Sbjct: 254 SDLIRLFEMCGFPPSSNYLF-LGDYVDRGKQSLETILLL 291
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,675
Number of Sequences: 5004
Number of extensions: 59552
Number of successful extensions: 175
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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