Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0746.Seq
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1023 - 26952195-26952635,26952723-26952934,26953038-269537...    31   0.65 
11_06_0499 + 24354810-24355212,24355677-24355735,24355846-243559...    28   6.0  
02_05_0541 - 29866396-29866881                                         28   6.0  

>06_03_1023 -
           26952195-26952635,26952723-26952934,26953038-26953757,
           26955042-26955735
          Length = 688

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = -3

Query: 272 NHIPLVRAVRGNHEQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEI-----LAKALAHK 108
           N +P+V  +    E++ +      G++ H LL+GG     LD+ + +     + + LAH 
Sbjct: 439 NLLPVVAYLYKKDEKLFVTEYMVNGSLAH-LLHGGSSMAALDWPRRLKIIKGVTRGLAHL 497

Query: 107 ADELPLI 87
            DELP++
Sbjct: 498 YDELPML 504


>11_06_0499 +
           24354810-24355212,24355677-24355735,24355846-24355929,
           24356040-24356337,24357026-24357203,24357686-24357746,
           24358209-24358391,24358581-24358742,24358844-24359037,
           24359354-24359504,24359551-24359578,24359845-24360117,
           24360660-24360724
          Length = 712

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = -1

Query: 505 SINQAAAKMARAGL--LVIEGKVWRTVY-YRFATREEREGKMSTNLMNKLDTI 356
           S+ +A   + R+ +  LV+E     T   Y+ A R E+EGK    ++NK DTI
Sbjct: 449 SVKRAFRAIRRSDVVALVVEAMACITEQDYKIAERIEKEGKACVIVVNKWDTI 501


>02_05_0541 - 29866396-29866881
          Length = 161

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 315 SPTEISRSFLLSNPIVSSLFIRFVLIFPSRSSLVANR 425
           SPT  SR  LL  P+V S F++ + I   R S+ A R
Sbjct: 12  SPTPSSRCLLLPIPVVVSTFLQTLAIALRRCSVTALR 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,139,736
Number of Sequences: 37544
Number of extensions: 407921
Number of successful extensions: 969
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)