Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0746.Seq
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37933| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_1044| Best HMM Match : Metallophos (HMM E-Value=5.8e-16)            28   6.2  
SB_8792| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  
SB_39441| Best HMM Match : SERTA (HMM E-Value=3.4)                     28   8.1  
SB_15902| Best HMM Match : AMOP (HMM E-Value=3.5e-13)                  28   8.1  

>SB_37933| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 510 LLRLLARQRPAHRSYYASPGNE*--LPLCPSYTCSFQSELS 626
           L+   A + P  R++Y S G++   LPLCPS T S  S L+
Sbjct: 145 LISARACRTPKQRNFYLSRGHKVAPLPLCPSKTPSMNSSLA 185


>SB_1044| Best HMM Match : Metallophos (HMM E-Value=5.8e-16)
          Length = 250

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 248 VRGNHEQMMIDGLSERGNVNHWLLNGG 168
           ++GNH+    + L    ++N WL NGG
Sbjct: 65  IKGNHDAWCENYLRTNESLNEWLFNGG 91


>SB_8792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1045

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 221 IDGLSERGNVNHWLLNGGGWFFNLDYDKEILAK 123
           +DG+   G V   + N GGW   L  DK +  K
Sbjct: 295 VDGVDGLGGVEALIANVGGWLLMLQKDKALADK 327


>SB_39441| Best HMM Match : SERTA (HMM E-Value=3.4)
          Length = 463

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = -1

Query: 406 EREGKMSTNLMNKLDTIGFDNKKDLLISVGDLVDRGNENVECLELITFPWLE 251
           E +  +  ++ N  D +  D+  DLL S+ + +DRG+   E L+L+ F  ++
Sbjct: 305 ESKTDLGVHVKNVSDRMYTDSASDLLFSIDEELDRGD---EVLKLVRFRMMD 353


>SB_15902| Best HMM Match : AMOP (HMM E-Value=3.5e-13)
          Length = 609

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 470 CPCHFSRGLIYAGTV 514
           CPCHF+R L Y  T+
Sbjct: 468 CPCHFARSLYYNSTL 482


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,662,466
Number of Sequences: 59808
Number of extensions: 465550
Number of successful extensions: 1011
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)