Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0745X.Seq
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    27   1.6  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   3.7  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    25   3.7  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   4.8  

>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 173 APRTYNTQRTDPSVSNVPS 117
           +P  Y+  RT+P+V+N+PS
Sbjct: 393 SPEGYDNNRTNPTVNNLPS 411


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 197 RGTDDRQPAPRTYN-TQRTDPSVSNVPSIDAPAIFG 93
           R  DD Q A  + N T    PS++NVP+ +APA  G
Sbjct: 404 RARDDSQQAYISANMTTGEMPSMTNVPAGNAPAAPG 439


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = -2

Query: 254 SWRRLSSSFMI---KTRVTHSSRGTDDRQPAPRTYNTQRTDPSVSNVPSIDA 108
           S+ RLSS  +    KT   H S G +D      +   Q + PS S +  +DA
Sbjct: 560 SFDRLSSESIKDSQKTEELHDSFGINDEVDQSTSLYVQNSQPSASQLTIVDA 611


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -2

Query: 212 VTHSSRG-TDDRQPAPRTYNTQRTDPSVSNVP 120
           V  +SR  T  R P PR  NTQ    S+S  P
Sbjct: 509 VRSASRAMTSPRTPLPRVKNTQNPSRSISAEP 540


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,640,956
Number of Sequences: 5004
Number of extensions: 28819
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)