Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0745X.Seq
(423 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0376 - 16965504-16966101,16966212-16966416,16967175-169681... 28 3.6
10_02_0003 + 4022220-4022900 28 3.6
12_02_0219 + 15822050-15824896 27 6.2
12_01_0040 + 323731-323801,323893-324097,324415-324558,325070-32... 27 6.2
11_01_0041 + 307816-307892,307983-308187,308499-308642,309132-30... 27 6.2
04_03_0786 - 19621674-19621960,19623152-19623193,19623679-19624339 27 6.2
03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302... 27 6.2
03_02_0952 + 12666750-12666777,12666965-12667185,12669464-126696... 27 6.2
11_06_0607 + 25437897-25438046,25438180-25438236,25438522-254386... 27 8.2
>11_04_0376 -
16965504-16966101,16966212-16966416,16967175-16968197,
16968241-16968892,16969025-16969387,16970095-16970451
Length = 1065
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 166 RGAGCRSSVPRELCVTRVLIMNELDSLR 249
RGA S +PR LC R+ I N SLR
Sbjct: 474 RGARYMSIMPRSLCRKRIQISNASQSLR 501
>10_02_0003 + 4022220-4022900
Length = 226
Score = 27.9 bits (59), Expect = 3.6
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -2
Query: 410 TAWRRSSRDYRARFVGCASVC--DRSAPGSRWPGPATCRMXWPRISNSVFKGFRSWRRLS 237
T++ +S RA F C S+ R+A S P+T WP ++++ +GF S S
Sbjct: 162 TSYASASVLRRAAF-DCGSISGPSRAAASSAGRCPSTLSAAWPSVTSNGRRGFGSASATS 220
Query: 236 SS 231
SS
Sbjct: 221 SS 222
>12_02_0219 + 15822050-15824896
Length = 948
Score = 27.1 bits (57), Expect = 6.2
Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Frame = -2
Query: 248 RRLSSSFMIKTRVTHSSRGTDDRQPA--PRTYNTQRTDPSVSNVPSIDAPAIFGRFLYHH 75
R L+S RVTHS R +RQ A R N P AP IF + Y H
Sbjct: 90 RPLTSGLAYAARVTHSERELFERQQAWSIRAMNFSSKRPRAEEY----APVIFAQDAYKH 145
>12_01_0040 +
323731-323801,323893-324097,324415-324558,325070-325211,
326918-327033
Length = 225
Score = 27.1 bits (57), Expect = 6.2
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 103 AGASIEGTLLTEGSVRCVLYVRGAGCRSSVP 195
AGA + L T S RC+L A SSVP
Sbjct: 39 AGADVPSLLHTRSSARCLLRKAAAQAFSSVP 69
>11_01_0041 +
307816-307892,307983-308187,308499-308642,309132-309273,
309552-309616
Length = 210
Score = 27.1 bits (57), Expect = 6.2
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 103 AGASIEGTLLTEGSVRCVLYVRGAGCRSSVP 195
AGA + L T S RC+L A SSVP
Sbjct: 41 AGADVPSLLHTRSSTRCLLRKAAAQAFSSVP 71
>04_03_0786 - 19621674-19621960,19623152-19623193,19623679-19624339
Length = 329
Score = 27.1 bits (57), Expect = 6.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 317 GPATCRMXWPRISNSVFKGFRSWRRLSSS 231
GP CR W ++ +K R W R SS
Sbjct: 69 GPVQCRKRWSNLAGD-YKKIREWERSLSS 96
>03_05_0379 +
23628200-23628366,23629074-23629133,23630177-23630209,
23630253-23630665,23631522-23632008,23632623-23633334
Length = 623
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Frame = -2
Query: 389 RDYRARFVGCASVCDRSAP----GSRWPGPA 309
+ R VGCA+VCD G R+PG A
Sbjct: 239 KQIRCMAVGCAAVCDEDVAQRLLGGRYPGAA 269
>03_02_0952 +
12666750-12666777,12666965-12667185,12669464-12669649,
12670147-12670212,12670335-12670427,12670528-12670659,
12670794-12670895,12670993-12671070,12671148-12671219,
12672185-12672292,12672368-12672465,12672904-12672964,
12673058-12673120,12673228-12673284,12673571-12673729,
12674310-12674441,12674516-12674602,12674667-12674738,
12675899-12675985,12676052-12676427,12676727-12676788,
12676946-12677014,12677096-12677142,12677189-12677342,
12677874-12677999
Length = 911
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = -2
Query: 416 CPTAWRRSSRDYRARFVGCASVCDRSAPGSRWPGPATC 303
C T+WR R Y + CA R+ G+ A C
Sbjct: 22 CRTSWRGGGRPYECSVLSCAWNAPRALTGALASTTAQC 59
>11_06_0607 +
25437897-25438046,25438180-25438236,25438522-25438602,
25438720-25438777,25438888-25438991,25439064-25439115,
25439232-25439281,25440279-25440443,25440531-25440603,
25440714-25440846,25441146-25441203,25441411-25441458,
25441593-25441676,25441803-25441868,25442419-25442502
Length = 420
Score = 26.6 bits (56), Expect = 8.2
Identities = 20/74 (27%), Positives = 31/74 (41%)
Frame = -2
Query: 338 APGSRWPGPATCRMXWPRISNSVFKGFRSWRRLSSSFMIKTRVTHSSRGTDDRQPAPRTY 159
AP R P + P + S F G R RRL SS ++ + D + A +
Sbjct: 10 APRPRVPAVSAAARSLPP-NTSFFSGGRRRRRLLSSSVVCMAEPYLIAKLDSAEKAWKEM 68
Query: 158 NTQRTDPSVSNVPS 117
+ + DP + + PS
Sbjct: 69 SVRLADPDIVSDPS 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,344,678
Number of Sequences: 37544
Number of extensions: 209778
Number of successful extensions: 624
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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