Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0745X.Seq
         (423 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17334| Best HMM Match : WD40 (HMM E-Value=3.1e-30)                  49   1e-06
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_59294| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.20004e-41)    29   1.6  
SB_55198| Best HMM Match : NUDE_C (HMM E-Value=0.84)                   29   2.1  
SB_35| Best HMM Match : zf-U1 (HMM E-Value=0.12)                       29   2.1  
SB_52215| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_1519| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                 28   3.7  
SB_29638| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_26977| Best HMM Match : WD40 (HMM E-Value=1.9e-10)                  27   4.8  
SB_25614| Best HMM Match : DUF1322 (HMM E-Value=3.1)                   27   4.8  
SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   6.4  
SB_27457| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-17)                 27   6.4  
SB_26383| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_14238| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_17334| Best HMM Match : WD40 (HMM E-Value=3.1e-30)
          Length = 1292

 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 22/39 (56%), Positives = 32/39 (82%), Gaps = 3/39 (7%)
 Frame = +2

Query: 302 DTSLAQATSNLEPIGRIQMRTRRTLRG---NLAKIYAMQ 409
           DT+LAQ ++N++ +GRIQMRTRRTLRG   N+  IY+++
Sbjct: 27  DTTLAQVSANIDQVGRIQMRTRRTLRGGLDNICSIYSLK 65


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 365  GCASVCDRSAPGSRWPGPATCRMXWPRISNS 273
            G  +VC+     +RW G   C + W R +NS
Sbjct: 5405 GIWNVCNGHGTCNRWTGDCLCDLKWNRTTNS 5435


>SB_59294| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.20004e-41)
          Length = 851

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 20/60 (33%), Positives = 34/60 (56%)
 Frame = +1

Query: 181 RSSVPRELCVTRVLIMNELDSLRQERKPLKTLLEMRGXXMRHVAGPGHLEPGADRSHTDA 360
           RS+  +++ + R  I+N   +LR  + PL+ L++M    +    G G L+ G  RSH+DA
Sbjct: 781 RSTFEKQMSLVRGQILNLSQALRDSKSPLQ-LVQMPVVTVERKKGDG-LDRG--RSHSDA 836


>SB_55198| Best HMM Match : NUDE_C (HMM E-Value=0.84)
          Length = 649

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 236 SSFMIKTRVTHSSRGTDDRQPAPRTYNTQRTDPSVS 129
           +S   KT+V  SS G D R P+P    + RT  S S
Sbjct: 538 TSIDAKTKVKTSSSGEDSRTPSPSPGPSPRTSSSAS 573


>SB_35| Best HMM Match : zf-U1 (HMM E-Value=0.12)
          Length = 366

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 206 HSSRGTDDRQPAPRTYNTQRTDPSVSNVP 120
           H  R  D    APR  NTQR + S +N P
Sbjct: 131 HPRRHNDSATNAPRRCNTQRHNDSATNAP 159


>SB_52215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 742

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = -3

Query: 199 HVEQTIDNPRRARTTRNAPILLSAMSLRSTLQRFSGDFY 83
           H++ +I +P +   T+N  I ++    +   ++F G+ Y
Sbjct: 230 HLQTSISSPHKTSPTKNVEISINVSGKKGKRKKFQGEVY 268


>SB_1519| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 943

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -2

Query: 413 PTAWRRSSRDYRARFVGCASVCDRSAPG 330
           PTAW  SS   RA   GC   CD+S  G
Sbjct: 342 PTAWH-SSICLRAELFGCQESCDQSPLG 368


>SB_29638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +1

Query: 268 KTLLEMRGXXMRHVAGPGHLEP-GADRSHTDAHPTN 372
           KT  E  G   R       L+P GAD SHT  H TN
Sbjct: 67  KTHAESSGWTKRSARTRERLQPIGADASHTITHDTN 102


>SB_26977| Best HMM Match : WD40 (HMM E-Value=1.9e-10)
          Length = 345

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 308 SLAQATSNLEPIGRIQMRTRRTLRGNLAKIYAMQWGSN 421
           ++   +  LE +    M+ RR L+G+  K+ +M W  +
Sbjct: 199 TVKDVSRKLESLQGCHMKVRRILKGHQGKVLSMDWSGD 236


>SB_25614| Best HMM Match : DUF1322 (HMM E-Value=3.1)
          Length = 158

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -2

Query: 269 FKGFRSWRRLSSSFMIKTRVTHSSRGTDDRQPAPRTYNTQRTDPSVSNVP 120
           +K FR  R L +    +  V   SR   D   A R+    RT PS+ N+P
Sbjct: 100 YKDFR--RELRNRICPRQVVNDESRQRQDLYMAGRSEGRNRTGPSLPNIP 147


>SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1980

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 213  RDTQLTWNRRSTTRAAHVQHATHRSFCQQCPFDRRSSDFRAIS 85
            R  +L WN   T  A  V  A H +  + C F+R+ +   ++S
Sbjct: 1366 RTRKLAWNVPVTRTAQLVSSAAHAAMGKGCEFERQQAMSNSLS 1408


>SB_27457| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-17)
          Length = 352

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 176 PAPRTYNTQRTDPSVSNVPS-IDAPAIFGRFLYHH*DWITTFWH 48
           PA  T N ++T  S++ V + I AP IFG F+     WIT   H
Sbjct: 21  PADYTKNFKQTYVSLAVVNALIAAPTIFGNFVIILAVWITPALH 64


>SB_26383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1142

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = -1

Query: 234 LVHD*DTRDTQLTWNRR---STTRAAHVQHATH 145
           + HD + R   +T NR    S TR  HVQH TH
Sbjct: 901 VTHD-EARPGMVTCNRHARWSKTRYGHVQHVTH 932


>SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1488

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 109  ASIEGTLLTEGSVRCVLYVRGAGCRSSVPRELCVTRVLI 225
            A ++GTL TE  VR  L ++   CR+   +  CV RV I
Sbjct: 1382 AIVQGTLRTERYVRHALVLQVTVCRARYAQR-CVRRVSI 1419


>SB_14238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -1

Query: 186 RSTTRAAHVQHATHRSFCQQCP--FD-RRSSDFRAISISPLRL 67
           R T     ++H    + CQQCP  +D ++S D R  SI P  L
Sbjct: 678 RDTVYDKCIKHTHTGNMCQQCPTTYDSQQSDDVRRRSIRPYDL 720


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,152,114
Number of Sequences: 59808
Number of extensions: 245821
Number of successful extensions: 881
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)