Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0745X.Seq
         (423 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49127-9|CAA88948.1|  340|Caenorhabditis elegans Hypothetical pr...    70   6e-13
X17497-1|CAA35532.1|  340|Caenorhabditis elegans G-protein protein.    70   6e-13
AF291846-1|AAK55963.1|  340|Caenorhabditis elegans heterotrimeri...    70   6e-13
Z71263-5|CAA95824.1|  356|Caenorhabditis elegans Hypothetical pr...    33   0.084
AF291847-1|AAK55964.1|  356|Caenorhabditis elegans heterotrimeri...    33   0.084
Z97628-3|CAB10727.1|  819|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical p...    29   1.8  
Z79755-13|CAB02114.1|  819|Caenorhabditis elegans Hypothetical p...    29   1.8  
Z35639-3|CAA84695.2|  780|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U58083-1|AAC47120.1|  780|Caenorhabditis elegans CUL-1 protein.        27   5.5  
AF067214-4|AAC17001.1|  399|Caenorhabditis elegans Dystroglycan ...    27   7.3  
AF026209-11|AAB71282.1|  353|Caenorhabditis elegans Seven tm rec...    27   7.3  

>Z49127-9|CAA88948.1|  340|Caenorhabditis elegans Hypothetical
           protein F13D12.7 protein.
          Length = 340

 Score = 70.1 bits (164), Expect = 6e-13
 Identities = 32/40 (80%), Positives = 35/40 (87%)
 Frame = +2

Query: 302 DTSLAQATSNLEPIGRIQMRTRRTLRGNLAKIYAMQWGSN 421
           DT+LA   SNLEPIGRIQMRTRRTLRG+LAKIYAM W S+
Sbjct: 27  DTTLATVASNLEPIGRIQMRTRRTLRGHLAKIYAMHWASD 66


>X17497-1|CAA35532.1|  340|Caenorhabditis elegans G-protein protein.
          Length = 340

 Score = 70.1 bits (164), Expect = 6e-13
 Identities = 32/40 (80%), Positives = 35/40 (87%)
 Frame = +2

Query: 302 DTSLAQATSNLEPIGRIQMRTRRTLRGNLAKIYAMQWGSN 421
           DT+LA   SNLEPIGRIQMRTRRTLRG+LAKIYAM W S+
Sbjct: 27  DTTLATVASNLEPIGRIQMRTRRTLRGHLAKIYAMHWASD 66


>AF291846-1|AAK55963.1|  340|Caenorhabditis elegans heterotrimeric G
           protein beta subunit1 protein.
          Length = 340

 Score = 70.1 bits (164), Expect = 6e-13
 Identities = 32/40 (80%), Positives = 35/40 (87%)
 Frame = +2

Query: 302 DTSLAQATSNLEPIGRIQMRTRRTLRGNLAKIYAMQWGSN 421
           DT+LA   SNLEPIGRIQMRTRRTLRG+LAKIYAM W S+
Sbjct: 27  DTTLATVASNLEPIGRIQMRTRRTLRGHLAKIYAMHWASD 66


>Z71263-5|CAA95824.1|  356|Caenorhabditis elegans Hypothetical
           protein F52A8.2 protein.
          Length = 356

 Score = 33.1 bits (72), Expect = 0.084
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 302 DTSLAQATSNLEPIGRIQMRTRRTLRGNLAKIYAMQW 412
           D  + QA   L+ +G + ++ RR L+G++ K+  M W
Sbjct: 40  DIPIQQAAERLDVMGALGVKQRRILKGHVGKVLCMDW 76


>AF291847-1|AAK55964.1|  356|Caenorhabditis elegans heterotrimeric G
           protein beta subunit2 protein.
          Length = 356

 Score = 33.1 bits (72), Expect = 0.084
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 302 DTSLAQATSNLEPIGRIQMRTRRTLRGNLAKIYAMQW 412
           D  + QA   L+ +G + ++ RR L+G++ K+  M W
Sbjct: 40  DIPIQQAAERLDVMGALGVKQRRILKGHVGKVLCMDW 76


>Z97628-3|CAB10727.1|  819|Caenorhabditis elegans Hypothetical
           protein F43G9.12 protein.
          Length = 819

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -2

Query: 257 RSWRRLSSSFMIKTRVTHSSR-GTDDRQPAPRTYNTQRTDPSVSNVPSI 114
           R  RR    F +  R+ H     TDD +P P++ N Q+    V  V S+
Sbjct: 469 RGRRRREREFTL-ARINHEEGLSTDDEEPTPQSMNDQKICDEVEAVASV 516


>Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical
           protein F14F8.13 protein.
          Length = 328

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 10/42 (23%), Positives = 28/42 (66%)
 Frame = -3

Query: 127 MSLRSTLQRFSGDFYITIKIG*PLFGTFCIFSISPH*NKDIS 2
           ++++S++ ++   F + I +   +FGT C+ S++ + N+++S
Sbjct: 142 LNIQSSVHKYLPHFTLCIILKDAVFGTACVLSLAKYLNEEVS 183


>Z79755-13|CAB02114.1|  819|Caenorhabditis elegans Hypothetical
           protein F43G9.12 protein.
          Length = 819

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -2

Query: 257 RSWRRLSSSFMIKTRVTHSSR-GTDDRQPAPRTYNTQRTDPSVSNVPSI 114
           R  RR    F +  R+ H     TDD +P P++ N Q+    V  V S+
Sbjct: 469 RGRRRREREFTL-ARINHEEGLSTDDEEPTPQSMNDQKICDEVEAVASV 516


>Z35639-3|CAA84695.2|  780|Caenorhabditis elegans Hypothetical
           protein D2045.6 protein.
          Length = 780

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 124 TLLTEGSVRCVLYVRGAGCRSSVPRELCVTRVLIMNELDSLRQ 252
           T L +   RC LY+  +   +  P   C   VLI N+LD L++
Sbjct: 267 TRLNQEDDRCQLYLNSS---TKTPLATCCESVLISNQLDFLQR 306


>U58083-1|AAC47120.1|  780|Caenorhabditis elegans CUL-1 protein.
          Length = 780

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 124 TLLTEGSVRCVLYVRGAGCRSSVPRELCVTRVLIMNELDSLRQ 252
           T L +   RC LY+  +   +  P   C   VLI N+LD L++
Sbjct: 267 TRLNQEDDRCQLYLNSS---TKTPLATCCESVLISNQLDFLQR 306


>AF067214-4|AAC17001.1|  399|Caenorhabditis elegans Dystroglycan
           protein 2 protein.
          Length = 399

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 106 GASIEGTLLTEGSVRCVLYVRGAGCRSSVPRE 201
           G+S  GT+L+ G++  ++ +   GC+  V  E
Sbjct: 337 GSSTTGTILSLGTICAIVVILHYGCKKEVKEE 368


>AF026209-11|AAB71282.1|  353|Caenorhabditis elegans Seven tm
           receptor protein 262 protein.
          Length = 353

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 293 WPRISNSVFKGFRSWRRLSSSFMIKTRVTHSS 198
           WP++ NS+ + + SW+    S ++   +  SS
Sbjct: 186 WPKLENSITETYFSWKGAEGSLIVMGSIGLSS 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,371,892
Number of Sequences: 27780
Number of extensions: 168802
Number of successful extensions: 501
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)