Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0745X.Seq
         (423 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18210.1 68416.m02316 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   3.0  
At2g15345.1 68415.m01755 expressed protein                             28   3.0  
At5g46490.2 68418.m05725 disease resistance protein (TIR-NBS cla...    27   4.0  
At5g46490.1 68418.m05724 disease resistance protein (TIR-NBS cla...    27   4.0  
At5g46260.1 68418.m05695 disease resistance protein (TIR-NBS-LRR...    27   4.0  
At5g14960.1 68418.m01755 transcription factor, putative / E2F-li...    27   6.9  
At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein ...    27   6.9  
At1g44770.1 68414.m05129 expressed protein                             26   9.1  

>At3g18210.1 68416.m02316 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein contains Pfam domain PF03171 2OG-Fe(II)
           oxygenase superfamily
          Length = 394

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -1

Query: 213 RDTQLTWNRRSTTRAAHVQHATHRSFCQQCPFDRRSSDFRAI 88
           R   L W R S  R     H    S+C +C  ++R    R+I
Sbjct: 338 RVNMLLWCRSSVFRELKTHHKDFSSWCGECFCEKRDEKVRSI 379


>At2g15345.1 68415.m01755 expressed protein
          Length = 121

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 398 RSSRDYRARFVGCASVCDRSAPGSRWPGPATCRMXW 291
           RS+ +  AR     S+C+    GS+ PG  T R  W
Sbjct: 66  RSASEAAARAFDSISMCEAYLEGSKTPGYVTTRNWW 101


>At5g46490.2 68418.m05725 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 858

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 278 NSVFKGFRSWRRLSSSFMIKTRVTHSSRGTDD 183
           N++F+ F+  + +  SF  K+R  HSS   DD
Sbjct: 225 NNLFRHFQVRKFIDRSFAYKSREIHSSANPDD 256


>At5g46490.1 68418.m05724 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 357

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 278 NSVFKGFRSWRRLSSSFMIKTRVTHSSRGTDD 183
           N++F+ F+  + +  SF  K+R  HSS   DD
Sbjct: 225 NNLFRHFQVRKFIDRSFAYKSREIHSSANPDD 256


>At5g46260.1 68418.m05695 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1205

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 278 NSVFKGFRSWRRLSSSFMIKTRVTHSSRGTDD 183
           N++F+ F+  + +  SF  K+R  HSS   DD
Sbjct: 225 NNLFRHFQVRKFIDRSFAYKSREIHSSANPDD 256


>At5g14960.1 68418.m01755 transcription factor, putative / E2F-like
           repressor E2L1 (E2L1) identical to E2F-like repressor
           E2L1 GI:20502504 from [Arabidopsis thaliana]
          Length = 359

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 404 WRRSSRDYRARFV-GCASVCDRSAPGSR 324
           W  S   +  RF+ G AS+CDR+ P  R
Sbjct: 215 WLGSKTIFENRFIDGSASLCDRNVPKKR 242


>At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 310

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 199 ELCVTRVL-IMNELDSLRQERKPLK 270
           ELC+ R+  +M ELDSLR E   L+
Sbjct: 97  ELCLNRLQSLMTELDSLRHENDSLR 121


>At1g44770.1 68414.m05129 expressed protein
          Length = 271

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +1

Query: 232 ELDSLRQERKPLKTLLE 282
           EL++LRQE + L+TLLE
Sbjct: 51  ELEALRQENRRLRTLLE 67


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,789,526
Number of Sequences: 28952
Number of extensions: 155604
Number of successful extensions: 418
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)