Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0744.Seq
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 168 8e-43
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 107 2e-24
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 103 2e-23
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 92 7e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 64 3e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 63 4e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 60 3e-10
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 51 2e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 40 3e-04
SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.2
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 27 2.9
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 5.0
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc... 26 6.6
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 26 6.6
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 6.6
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 25 8.8
SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb... 25 8.8
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 8.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 168 bits (408), Expect = 8e-43
Identities = 78/85 (91%), Positives = 83/85 (97%)
Frame = +1
Query: 1 APEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSG 180
APEEHP LLTEAPLNPK+NREKMTQI+FETFN+PA YVAIQAVLSLYASGRTTGIVLDSG
Sbjct: 97 APEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSG 156
Query: 181 DGVSHTVPIYEGYALPHAILRLDLA 255
DGV+HTVPIYEGYALPHAI+RLDLA
Sbjct: 157 DGVTHTVPIYEGYALPHAIMRLDLA 181
Score = 165 bits (402), Expect = 5e-42
Identities = 87/156 (55%), Positives = 98/156 (62%)
Frame = +3
Query: 249 LGGRDLTDYLMKILTERGYSFTTTADREIVRDTKEKLCYVALDFEQEMATAAASTSLEKS 428
L GRDLTDYLMKIL ERGY+F+TTA+REIVRD KEKLCYVALDFEQE+ TAA S+SLEKS
Sbjct: 180 LAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKS 239
Query: 429 YELPDGQVITIGNERFRCPEALFQPSFWVWNRAXXXXXXXXXXXXXXXXXXXXXXXXXXX 608
YELPDGQVITIGNERFR PEALFQPS A
Sbjct: 240 YELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVM 299
Query: 609 XXXXXXXXXXXXGCRRRSPLFAPSNIKIKIIAPPER 716
++ APS++K+KI+APPER
Sbjct: 300 SGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPER 335
Score = 123 bits (296), Expect = 3e-29
Identities = 58/81 (71%), Positives = 62/81 (76%)
Frame = +2
Query: 509 LGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAFCALEHQ 688
LG+E+ GIHE YNSIMKCDVDIRKDLY N VMSGGTTMYPGIADRMQKEI A +
Sbjct: 267 LGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMK 326
Query: 689 DQDHRSPREKYSVWIGGSILA 751
+ P KYSVWIGGSILA
Sbjct: 327 VKIVAPPERKYSVWIGGSILA 347
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 107 bits (257), Expect = 2e-24
Identities = 49/84 (58%), Positives = 62/84 (73%)
Frame = +1
Query: 4 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGD 183
P +LLTE P+NP ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGD
Sbjct: 98 PRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGD 157
Query: 184 GVSHTVPIYEGYALPHAILRLDLA 255
GV+H VP+YE L H + RLD+A
Sbjct: 158 GVTHIVPVYESVVLNHLVGRLDVA 181
Score = 101 bits (241), Expect = 1e-22
Identities = 44/85 (51%), Positives = 60/85 (70%)
Frame = +3
Query: 249 LGGRDLTDYLMKILTERGYSFTTTADREIVRDTKEKLCYVALDFEQEMATAAASTSLEKS 428
+ GRD T YL+ +L +GY+F TAD E VR+ KEKLCYV+ D E + + +T L ++
Sbjct: 180 VAGRDATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRN 239
Query: 429 YELPDGQVITIGNERFRCPEALFQP 503
Y LPDG+VI +G+ER+ CPE LFQP
Sbjct: 240 YTLPDGRVIKVGSERYECPECLFQP 264
Score = 63.7 bits (148), Expect = 3e-11
Identities = 36/93 (38%), Positives = 57/93 (61%), Gaps = 11/93 (11%)
Frame = +2
Query: 506 LLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITA--FCAL 679
L+G E G+ E ++++I DVDIRK LY V+SGG++MY G+ R++KEI F +
Sbjct: 266 LVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERV 325
Query: 680 EHQD---------QDHRSPREKYSVWIGGSILA 751
H D + +PR +++V+IGG++LA
Sbjct: 326 LHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLA 358
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 103 bits (248), Expect = 2e-23
Identities = 45/78 (57%), Positives = 62/78 (79%)
Frame = +1
Query: 4 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGD 183
PEEHP+LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGIVL+ GD
Sbjct: 103 PEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGD 162
Query: 184 GVSHTVPIYEGYALPHAI 237
G++H+VPIY+G+++P AI
Sbjct: 163 GLTHSVPIYDGFSIPSAI 180
Score = 88.2 bits (209), Expect = 1e-18
Identities = 40/85 (47%), Positives = 54/85 (63%)
Frame = +3
Query: 249 LGGRDLTDYLMKILTERGYSFTTTADREIVRDTKEKLCYVALDFEQEMATAAASTSLEKS 428
+GGRD+TDYL L + G+ ++A++EIVR+ KEK CYVA DF E+ + +
Sbjct: 185 IGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHT 244
Query: 429 YELPDGQVITIGNERFRCPEALFQP 503
Y+LPD Q IT+G E F PE LF P
Sbjct: 245 YQLPDNQTITLGTECFSAPEVLFNP 269
Score = 74.9 bits (176), Expect = 1e-14
Identities = 31/82 (37%), Positives = 53/82 (64%)
Frame = +2
Query: 506 LLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAFCALEH 685
++G E+ G+H ++ SI+ D+D+R LY+N V+SGG+T+ G +R E+ A ++
Sbjct: 271 MMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKN 330
Query: 686 QDQDHRSPREKYSVWIGGSILA 751
Q + + SP ++ W+GGSILA
Sbjct: 331 QVKIYASPERMHNAWLGGSILA 352
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 92.3 bits (219), Expect = 7e-20
Identities = 46/92 (50%), Positives = 61/92 (66%), Gaps = 8/92 (8%)
Frame = +1
Query: 4 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT--------T 159
PE+H LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L AS + T
Sbjct: 121 PEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLT 180
Query: 160 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 255
G V+DSGDGV+H +P+ EGY + +I + LA
Sbjct: 181 GTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLA 212
Score = 43.2 bits (97), Expect = 4e-05
Identities = 16/42 (38%), Positives = 28/42 (66%)
Frame = +2
Query: 536 ETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEI 661
E V N + +D+RK LY N V+SGG+T++ +R+Q+++
Sbjct: 309 ELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDL 350
Score = 36.7 bits (81), Expect = 0.004
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +3
Query: 249 LGGRDLTDYLMKILTERGYSFTTTADREIVRDTKEKLCYVALDFEQEMATAAASTS--LE 422
L GRD+T ++ +L +R ++ E + KE+ CYV D +E + L+
Sbjct: 211 LAGRDVTYFVQSLLRDRNEPDSSLKTAERI---KEECCYVCPDIVKEFSRFDREPDRYLK 267
Query: 423 KSYELPDGQVITI--GNERFRCPEALFQP 503
+ E G TI G ERF PE F P
Sbjct: 268 YASESITGHSTTIDVGFERFLAPEIFFNP 296
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 63.7 bits (148), Expect = 3e-11
Identities = 31/74 (41%), Positives = 43/74 (58%)
Frame = +1
Query: 4 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGD 183
P EHP+L+TE NP NR K + MFE+ PA Y+A Q + +ASG+ T ++D G
Sbjct: 96 PLEHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAFASGKGTACLVDIGA 155
Query: 184 GVSHTVPIYEGYAL 225
S IY+G+ L
Sbjct: 156 ERSSVSAIYDGFVL 169
Score = 52.8 bits (121), Expect = 5e-08
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Frame = +2
Query: 527 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAF---CALEHQDQD 697
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L+
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGSRLKIHASG 385
Query: 698 HRSPREKYSVWIGGSILA 751
H R Y+ W+GGSIL+
Sbjct: 386 HVVER-SYASWLGGSILS 402
Score = 34.3 bits (75), Expect = 0.019
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 399 AAASTSLEKSYELPDGQVITIGNERFRCPEALFQP 503
++ +T E +E PDG + G ER++ PE LF P
Sbjct: 254 SSETTIAESEFEFPDGSRMMFGAERYQIPEHLFVP 288
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 63.3 bits (147), Expect = 4e-11
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Frame = +2
Query: 521 SCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEI--TAFCALEHQDQ 694
S G+HE VY SI+ CD ++R L N V++GGT++ PG+++R+Q E+ A + +
Sbjct: 321 SVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHT 380
Query: 695 DHRSPREKYSVWIGGSILA 751
+ +VW GGSILA
Sbjct: 381 AETASATSNAVWFGGSILA 399
Score = 56.8 bits (131), Expect = 3e-09
Identities = 24/84 (28%), Positives = 48/84 (57%)
Frame = +1
Query: 4 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGD 183
P E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++D G
Sbjct: 99 PTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGS 158
Query: 184 GVSHTVPIYEGYALPHAILRLDLA 255
+ P+ +G + I + LA
Sbjct: 159 DNASVTPVVDGLIIRKGIFKQSLA 182
Score = 41.5 bits (93), Expect = 1e-04
Identities = 24/68 (35%), Positives = 32/68 (47%)
Frame = +3
Query: 306 SFTTTADREIVRDTKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCP 485
S+ R ++ + KE + V + A AS+ K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV---LDTPFDEAKASSRNPKPFEFPDGVTHKFGQERFRIS 299
Query: 486 EALFQPSF 509
E LF PSF
Sbjct: 300 EILFNPSF 307
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 60.5 bits (140), Expect = 3e-10
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Frame = +1
Query: 10 EHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGR--TTGIVLDSGD 183
EHP+ +TE NP R MT+++FE +N+P++ I + S Y + + ++GIVL+ G+
Sbjct: 115 EHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGN 174
Query: 184 GVSHTVPIYEG 216
SH +P+ G
Sbjct: 175 AASHVIPVLNG 185
Score = 38.3 bits (85), Expect = 0.001
Identities = 17/79 (21%), Positives = 41/79 (51%)
Frame = +2
Query: 506 LLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAFCALEH 685
++G++ GI E + + + + ++ ++ L +N +++GG PG+ R+++E+T+ +
Sbjct: 607 IVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETRIKRELTSIMPVGS 666
Query: 686 QDQDHRSPREKYSVWIGGS 742
R+ W G S
Sbjct: 667 SINVFRASNPLLDAWKGAS 685
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 50.8 bits (116), Expect = 2e-07
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 20/106 (18%)
Frame = +3
Query: 249 LGGRDLTDYLMKILTERGYSFTTTADREIVRDTKEKLCYVALDFEQEMATA--AASTSLE 422
+GG+ LT+YL ++++ R Y+ + IV + KE +CYV+ +F+++M + LE
Sbjct: 188 VGGKLLTNYLKEVISYRKYNM--MEETYIVNEIKESVCYVSQNFKEDMEICHEKPRSKLE 245
Query: 423 KSYELPD------------------GQVITIGNERFRCPEALFQPS 506
Y LPD QV+ + NERF PE LF PS
Sbjct: 246 ICYALPDYSTGKHGYIVRDINQKIEQQVLNLSNERFMIPELLFSPS 291
Score = 30.3 bits (65), Expect = 0.31
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +2
Query: 515 MESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEI 661
+ GI E V S+ +I+ L N V GG +PG R+ E+
Sbjct: 295 IREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSEL 343
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 40.3 bits (90), Expect = 3e-04
Identities = 25/80 (31%), Positives = 37/80 (46%)
Frame = +1
Query: 13 HPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 192
+PV L +RE TQ FE P +A + ++ LYA G G+V+D G +
Sbjct: 147 YPVCLVIPTYWSLYDRELATQFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKT 206
Query: 193 HTVPIYEGYALPHAILRLDL 252
PI +G + A +L L
Sbjct: 207 DITPILDGQIIFTATQQLPL 226
>SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 112
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 308 RVTPLGEDLHEVVGQVATAKSRRR 237
RVTP E +HE++ Q K R+R
Sbjct: 69 RVTPSEEKIHEMINQKRETKKRKR 92
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 27.1 bits (57), Expect = 2.9
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 206 STKVTLCPTPSSVWTWR 256
STK CP PS W W+
Sbjct: 52 STKTATCPDPSWEWAWQ 68
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 22 LLTEAPLNPKANREKMTQIMFETFN 96
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 571 DVALHDGVVHGLVDAARFHTQKEGW 497
D +L G + G+VD A++H + GW
Sbjct: 63 DTSLKPGEI-GIVDGAKYHYYQPGW 86
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 183 WCLPHRTHLRRLRSAPRHPPSGLGGRDLTDYLMKILTERGYSFTTTADREIVR 341
WC H H + L+ A RD+ L++I++++ S + +D +IVR
Sbjct: 987 WCSKHFLHSKTLKRA----------RDIRQQLVEIMSKQKISLESVSDWDIVR 1029
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +2
Query: 581 KDLYANTVMSGGTTMYPGIADRMQKEI 661
K+LY++ ++ GG +PG A +++ I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERI 553
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 675 PSNIKIKIIAPPERSTPYGS 734
P N+ +K I P RST YGS
Sbjct: 625 PHNLSVKKIRPIIRSTEYGS 644
>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 281
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 194 TPYPSTKVTLCPTPSSVWTWRSR 262
T YP L P+ SS W W SR
Sbjct: 156 TKYPLGAAPLRPSQSSKWQWISR 178
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 532 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 660
PR+ V R+R P P + R V PR RRQ +G+
Sbjct: 41 PRELVAQSTTSRKRDPNQPTPRERTVNKKADQPRRRRQAPQGN 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,791,748
Number of Sequences: 5004
Number of extensions: 53141
Number of successful extensions: 198
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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