Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0744.Seq
(752 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 177 6e-45
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 177 8e-45
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 177 1e-44
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 177 1e-44
SB_56| Best HMM Match : Actin (HMM E-Value=0) 177 1e-44
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 149 2e-36
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 139 2e-33
SB_54| Best HMM Match : Actin (HMM E-Value=0) 139 2e-33
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 118 4e-27
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 118 7e-27
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 116 3e-26
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 85 6e-17
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 72 4e-13
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 48 6e-06
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 35 0.082
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 34 0.11
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 32 0.43
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.43
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033) 31 1.3
SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21) 30 2.3
SB_30638| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_55729| Best HMM Match : YajC (HMM E-Value=0.56) 29 5.4
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 29 5.4
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 29 5.4
SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_45236| Best HMM Match : PRP38 (HMM E-Value=0) 28 9.4
SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 177 bits (432), Expect = 6e-45
Identities = 93/156 (59%), Positives = 100/156 (64%)
Frame = +3
Query: 249 LGGRDLTDYLMKILTERGYSFTTTADREIVRDTKEKLCYVALDFEQEMATAAASTSLEKS 428
L GRDLTDYLMKILTERGYSFTTTA+REIVRD KEKLCYVALDFEQEM TAA+S+SLEKS
Sbjct: 181 LAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMTTAASSSSLEKS 240
Query: 429 YELPDGQVITIGNERFRCPEALFQPSFWVWNRAXXXXXXXXXXXXXXXXXXXXXXXXXXX 608
YELPDGQVITIGNERFRCPEA+FQPSF A
Sbjct: 241 YELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVL 300
Query: 609 XXXXXXXXXXXXGCRRRSPLFAPSNIKIKIIAPPER 716
++ AP +KIKIIAPPER
Sbjct: 301 SGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPER 336
Score = 176 bits (428), Expect = 2e-44
Identities = 83/85 (97%), Positives = 85/85 (100%)
Frame = +1
Query: 1 APEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSG 180
APEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSG
Sbjct: 98 APEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSG 157
Query: 181 DGVSHTVPIYEGYALPHAILRLDLA 255
DGV+HTVPIYEGYALPHAILRLDLA
Sbjct: 158 DGVTHTVPIYEGYALPHAILRLDLA 182
Score = 129 bits (312), Expect = 2e-30
Identities = 63/85 (74%), Positives = 69/85 (81%)
Frame = +2
Query: 497 PAFLLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAFCA 676
P+FL GMES GIHET YNSIMKCDVDIRKDLYANTV+SGG+TMYPGIADRMQKEI+A
Sbjct: 265 PSFL-GMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEISALAP 323
Query: 677 LEHQDQDHRSPREKYSVWIGGSILA 751
+ + P KYSVWIGGSILA
Sbjct: 324 PTMKIKIIAPPERKYSVWIGGSILA 348
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 177 bits (431), Expect = 8e-45
Identities = 93/156 (59%), Positives = 100/156 (64%)
Frame = +3
Query: 249 LGGRDLTDYLMKILTERGYSFTTTADREIVRDTKEKLCYVALDFEQEMATAAASTSLEKS 428
L GRDLTDYLMKILTERGYSFTTTA+REIVRD KEKLCYVALDFEQEM TAA+S+SLEKS
Sbjct: 143 LAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKS 202
Query: 429 YELPDGQVITIGNERFRCPEALFQPSFWVWNRAXXXXXXXXXXXXXXXXXXXXXXXXXXX 608
YELPDGQVITIGNERFRCPEA+FQPSF A
Sbjct: 203 YELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVL 262
Query: 609 XXXXXXXXXXXXGCRRRSPLFAPSNIKIKIIAPPER 716
++ AP +KIKIIAPPER
Sbjct: 263 SGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPER 298
Score = 131 bits (316), Expect = 7e-31
Identities = 64/85 (75%), Positives = 69/85 (81%)
Frame = +2
Query: 497 PAFLLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAFCA 676
P+FL GMES GIHET YNSIMKCDVDIRKDLYANTV+SGGTTMYPGIADRMQKEI+A
Sbjct: 227 PSFL-GMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEISALAP 285
Query: 677 LEHQDQDHRSPREKYSVWIGGSILA 751
+ + P KYSVWIGGSILA
Sbjct: 286 PTMKIKIIAPPERKYSVWIGGSILA 310
Score = 126 bits (304), Expect = 2e-29
Identities = 59/67 (88%), Positives = 64/67 (95%)
Frame = +1
Query: 55 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 234
N + M +IMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHA
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHA 137
Query: 235 ILRLDLA 255
I+RLDLA
Sbjct: 138 IIRLDLA 144
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 177 bits (430), Expect = 1e-44
Identities = 93/156 (59%), Positives = 100/156 (64%)
Frame = +3
Query: 249 LGGRDLTDYLMKILTERGYSFTTTADREIVRDTKEKLCYVALDFEQEMATAAASTSLEKS 428
L GRDLTDYLMKILTERGYSFTTTA+REIVRD KEKLCYVALDFEQEM TAA+S+SLEKS
Sbjct: 181 LAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMETAASSSSLEKS 240
Query: 429 YELPDGQVITIGNERFRCPEALFQPSFWVWNRAXXXXXXXXXXXXXXXXXXXXXXXXXXX 608
YELPDGQVITIGNERFRCPEA+FQPSF A
Sbjct: 241 YELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVL 300
Query: 609 XXXXXXXXXXXXGCRRRSPLFAPSNIKIKIIAPPER 716
++ AP +KIKIIAPPER
Sbjct: 301 SGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPER 336
Score = 175 bits (426), Expect = 3e-44
Identities = 82/85 (96%), Positives = 85/85 (100%)
Frame = +1
Query: 1 APEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSG 180
APEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSG
Sbjct: 98 APEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSG 157
Query: 181 DGVSHTVPIYEGYALPHAILRLDLA 255
DGV+HTVPIYEGYALPHAI+RLDLA
Sbjct: 158 DGVTHTVPIYEGYALPHAIIRLDLA 182
Score = 130 bits (313), Expect = 2e-30
Identities = 63/85 (74%), Positives = 69/85 (81%)
Frame = +2
Query: 497 PAFLLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAFCA 676
P+FL GMES GIHET YNSIMKCDVDIRKDLYANTV+SGG+TMYPGIADRMQKEIT+
Sbjct: 265 PSFL-GMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEITSLAP 323
Query: 677 LEHQDQDHRSPREKYSVWIGGSILA 751
+ + P KYSVWIGGSILA
Sbjct: 324 PTMKIKIIAPPERKYSVWIGGSILA 348
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 177 bits (430), Expect = 1e-44
Identities = 94/156 (60%), Positives = 100/156 (64%)
Frame = +3
Query: 249 LGGRDLTDYLMKILTERGYSFTTTADREIVRDTKEKLCYVALDFEQEMATAAASTSLEKS 428
L GRDLTDYLMKILTERGYSFTTTA+REIVRD KEKL YVALDFEQEMATAAAS+SLEKS
Sbjct: 180 LAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEQEMATAAASSSLEKS 239
Query: 429 YELPDGQVITIGNERFRCPEALFQPSFWVWNRAXXXXXXXXXXXXXXXXXXXXXXXXXXX 608
YELPDGQVITIGNERFRCPEA+FQPSF A
Sbjct: 240 YELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVL 299
Query: 609 XXXXXXXXXXXXGCRRRSPLFAPSNIKIKIIAPPER 716
++ AP +KIKIIAPPER
Sbjct: 300 SGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPER 335
Score = 176 bits (428), Expect = 2e-44
Identities = 83/85 (97%), Positives = 85/85 (100%)
Frame = +1
Query: 1 APEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSG 180
APEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSG
Sbjct: 97 APEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSG 156
Query: 181 DGVSHTVPIYEGYALPHAILRLDLA 255
DGV+HTVPIYEGYALPHAILRLDLA
Sbjct: 157 DGVTHTVPIYEGYALPHAILRLDLA 181
Score = 128 bits (308), Expect = 6e-30
Identities = 62/85 (72%), Positives = 69/85 (81%)
Frame = +2
Query: 497 PAFLLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAFCA 676
P+FL GMES GIHET YNSIMKCDVDIRKDLYANTV+SGG+TM+PGIADRMQKEI+A
Sbjct: 264 PSFL-GMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEISALAP 322
Query: 677 LEHQDQDHRSPREKYSVWIGGSILA 751
+ + P KYSVWIGGSILA
Sbjct: 323 PTMKIKIIAPPERKYSVWIGGSILA 347
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 177 bits (430), Expect = 1e-44
Identities = 93/156 (59%), Positives = 100/156 (64%)
Frame = +3
Query: 249 LGGRDLTDYLMKILTERGYSFTTTADREIVRDTKEKLCYVALDFEQEMATAAASTSLEKS 428
L GRDLTDYLMKILTERGYSFTTTA+REIVRD KEKLCYVALDFEQEM TAA+S+SLEKS
Sbjct: 180 LAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKS 239
Query: 429 YELPDGQVITIGNERFRCPEALFQPSFWVWNRAXXXXXXXXXXXXXXXXXXXXXXXXXXX 608
YELPDGQVITIGNERFRCPEA+FQPSF A
Sbjct: 240 YELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVL 299
Query: 609 XXXXXXXXXXXXGCRRRSPLFAPSNIKIKIIAPPER 716
++ AP +KIKIIAPPER
Sbjct: 300 SGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPER 335
Score = 176 bits (428), Expect = 2e-44
Identities = 83/85 (97%), Positives = 85/85 (100%)
Frame = +1
Query: 1 APEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSG 180
APEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSG
Sbjct: 97 APEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSG 156
Query: 181 DGVSHTVPIYEGYALPHAILRLDLA 255
DGV+HTVPIYEGYALPHAILRLDLA
Sbjct: 157 DGVTHTVPIYEGYALPHAILRLDLA 181
Score = 130 bits (313), Expect = 2e-30
Identities = 63/85 (74%), Positives = 69/85 (81%)
Frame = +2
Query: 497 PAFLLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAFCA 676
P+FL GMES GIHET YNSIMKCDVDIRKDLYANTV+SGG+TMYPGIADRMQKEIT+
Sbjct: 264 PSFL-GMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEITSLAP 322
Query: 677 LEHQDQDHRSPREKYSVWIGGSILA 751
+ + P KYSVWIGGSILA
Sbjct: 323 PTMKIKIIAPPERKYSVWIGGSILA 347
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 149 bits (362), Expect = 2e-36
Identities = 80/152 (52%), Positives = 90/152 (59%)
Frame = +3
Query: 261 DLTDYLMKILTERGYSFTTTADREIVRDTKEKLCYVALDFEQEMATAAASTSLEKSYELP 440
D + + I ERGYSFTTTA+REIVRD KEKLCYVALDFEQEM TAA+S+S+EKSYELP
Sbjct: 158 DGVSHTVPIYEERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSIEKSYELP 217
Query: 441 DGQVITIGNERFRCPEALFQPSFWVWNRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 620
DGQVITIGNERFRCPEAL QPSF +
Sbjct: 218 DGQVITIGNERFRCPEALLQPSFLGMESSGIHETTYNSIMKCDVDIRKDLYANTVMSGGT 277
Query: 621 XXXXXXXXGCRRRSPLFAPSNIKIKIIAPPER 716
++ APS +KIKIIAPPER
Sbjct: 278 TMYPGLADRMQKEISALAPSTMKIKIIAPPER 309
Score = 149 bits (361), Expect = 2e-36
Identities = 72/76 (94%), Positives = 74/76 (97%), Gaps = 2/76 (2%)
Frame = +1
Query: 1 APEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSG 180
APEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSG
Sbjct: 98 APEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSG 157
Query: 181 DGVSHTVPIYE--GYA 222
DGVSHTVPIYE GY+
Sbjct: 158 DGVSHTVPIYEERGYS 173
Score = 131 bits (317), Expect = 5e-31
Identities = 64/85 (75%), Positives = 69/85 (81%)
Frame = +2
Query: 497 PAFLLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAFCA 676
P+FL GMES GIHET YNSIMKCDVDIRKDLYANTVMSGGTTMYPG+ADRMQKEI+A
Sbjct: 238 PSFL-GMESSGIHETTYNSIMKCDVDIRKDLYANTVMSGGTTMYPGLADRMQKEISALAP 296
Query: 677 LEHQDQDHRSPREKYSVWIGGSILA 751
+ + P KYSVWIGGSILA
Sbjct: 297 STMKIKIIAPPERKYSVWIGGSILA 321
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 139 bits (337), Expect = 2e-33
Identities = 58/82 (70%), Positives = 76/82 (92%)
Frame = +1
Query: 10 EHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 189
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLYA+GRTTG+VLD+GDGV
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAGDGV 185
Query: 190 SHTVPIYEGYALPHAILRLDLA 255
SH+VPIYEG+A+PH+I+R D+A
Sbjct: 186 SHSVPIYEGFAMPHSIMRTDIA 207
Score = 38.3 bits (85), Expect = 0.007
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = +2
Query: 530 IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPG 634
I E + +I K D+D+R+ LY+N V+SGG+T++ G
Sbjct: 257 IIEVLAFAIQKSDLDLRRVLYSNIVLSGGSTLFKG 291
Score = 33.9 bits (74), Expect = 0.14
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = +3
Query: 249 LGGRDLTDYLMKILTERGYSFTTTADREIVRDTKEK 356
+ GRD++ YL +L + G+ F ++++ EIVR KE+
Sbjct: 206 IAGRDVSRYLRLLLRKEGHCFHSSSELEIVRTIKEE 241
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 139 bits (337), Expect = 2e-33
Identities = 62/83 (74%), Positives = 72/83 (86%)
Frame = +1
Query: 7 EEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDG 186
E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LYASGRTTG V D GDG
Sbjct: 2144 EDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALYASGRTTGTVFDCGDG 2203
Query: 187 VSHTVPIYEGYALPHAILRLDLA 255
VSHTVP+Y+GY LPHA R+DLA
Sbjct: 2204 VSHTVPVYDGYWLPHATQRIDLA 2226
Score = 113 bits (271), Expect = 2e-25
Identities = 51/86 (59%), Positives = 64/86 (74%)
Frame = +3
Query: 249 LGGRDLTDYLMKILTERGYSFTTTADREIVRDTKEKLCYVALDFEQEMATAAASTSLEKS 428
L GRDLT YL +++TERGYSF +TA+++I+RD KE LCY A+D+E+E+ A S E
Sbjct: 2225 LAGRDLTHYLQRLVTERGYSFQSTAEQQIIRDLKETLCYCAMDYERELKEAETSDDCEAP 2284
Query: 429 YELPDGQVITIGNERFRCPEALFQPS 506
Y LPDGQ I IG+ERFR E LFQPS
Sbjct: 2285 YMLPDGQSIRIGSERFRAAEPLFQPS 2310
Score = 48.4 bits (110), Expect = 6e-06
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +2
Query: 506 LLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSG 613
LLG + GIHE+++ SI KCD+D+R +L+ N V+SG
Sbjct: 2311 LLGRDIDGIHESIFKSIKKCDIDLRAELFHNIVLSG 2346
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 118 bits (285), Expect = 4e-27
Identities = 57/85 (67%), Positives = 65/85 (76%)
Frame = +2
Query: 497 PAFLLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAFCA 676
PAFL GME+ GIHE +YN IMKCDVDIRKDLY+N V+SGG+TM+PGIADRMQKEI
Sbjct: 38 PAFL-GMEAPGIHEAIYNCIMKCDVDIRKDLYSNCVLSGGSTMFPGIADRMQKEIAMLAN 96
Query: 677 LEHQDQDHRSPREKYSVWIGGSILA 751
+ + P KYSVWIGGSILA
Sbjct: 97 ASMKVKVIAPPERKYSVWIGGSILA 121
Score = 68.9 bits (161), Expect = 4e-12
Identities = 38/105 (36%), Positives = 50/105 (47%)
Frame = +3
Query: 402 AASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFWVWNRAXXXXXXXXXXXXXXXXXX 581
A S LEK+YELPDGQVI+IGNERFRCPEA+FQP+F
Sbjct: 5 ANSPILEKTYELPDGQVISIGNERFRCPEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDIR 64
Query: 582 XXXXXXXXXXXXXXXXXXXXXGCRRRSPLFAPSNIKIKIIAPPER 716
++ + A +++K+K+IAPPER
Sbjct: 65 KDLYSNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPER 109
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 118 bits (283), Expect = 7e-27
Identities = 55/60 (91%), Positives = 57/60 (95%)
Frame = +1
Query: 76 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 255
IMFE FNSPA+YVAIQAVLSLYASGRTTG+V DSGDGVSH VPIYEGYALPHAILRLDLA
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLA 60
Score = 91.1 bits (216), Expect = 9e-19
Identities = 41/48 (85%), Positives = 45/48 (93%)
Frame = +3
Query: 249 LGGRDLTDYLMKILTERGYSFTTTADREIVRDTKEKLCYVALDFEQEM 392
L GRDLTDYLMK++TERGYSFTTTA+REIVRD KEKLCYVALDF QE+
Sbjct: 59 LAGRDLTDYLMKLMTERGYSFTTTAEREIVRDIKEKLCYVALDFYQEI 106
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 116 bits (278), Expect = 3e-26
Identities = 51/84 (60%), Positives = 63/84 (75%)
Frame = +1
Query: 4 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGD 183
P VLLTE PLNP NREKM ++MFE + +Y+AIQAVL+LYA G TG+V+DSGD
Sbjct: 102 PRNTKVLLTEPPLNPMKNREKMIEVMFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGD 161
Query: 184 GVSHTVPIYEGYALPHAILRLDLA 255
GV+H P+YEG+ALPH RLD+A
Sbjct: 162 GVTHICPVYEGFALPHLTRRLDIA 185
Score = 100 bits (239), Expect = 1e-21
Identities = 46/85 (54%), Positives = 58/85 (68%)
Frame = +3
Query: 249 LGGRDLTDYLMKILTERGYSFTTTADREIVRDTKEKLCYVALDFEQEMATAAASTSLEKS 428
+ GRD+T YL+K++ RGY+F TAD E VR KEKLCYV + EQE A +T L +
Sbjct: 184 IAGRDITKYLIKLMLLRGYAFNHTADFETVRMMKEKLCYVGYNIEQEQKLALETTVLVEQ 243
Query: 429 YELPDGQVITIGNERFRCPEALFQP 503
Y LPDG+V+ + ERF PEALFQP
Sbjct: 244 YTLPDGRVVKLSGERFEAPEALFQP 268
Score = 59.3 bits (137), Expect = 3e-09
Identities = 22/52 (42%), Positives = 37/52 (71%)
Frame = +2
Query: 506 LLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEI 661
L+ +E G+ E ++N+I D+D R + Y + V+SGG+TMYPG+ R+++EI
Sbjct: 270 LINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLEREI 321
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 581 KDLYANTVMSGGTTMYPGIADRMQKEITAFCALEH-QDQDHRSPREKYSVWIGGSILA 751
K LY V+ G T+ Q +TA L+ + + PR K+ V++GG++LA
Sbjct: 322 KQLYLERVLKGDTSKLSSGMGMEQIPLTADYLLQKFKIRIEDPPRRKHMVFMGGAVLA 379
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 85.0 bits (201), Expect = 6e-17
Identities = 36/81 (44%), Positives = 58/81 (71%)
Frame = +1
Query: 13 HPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 192
HP+L++EA N + REK+T++MFE +N PA ++ +VL+ +A+GR+ G+V+DSG +
Sbjct: 34 HPLLMSEAAWNTRIKREKLTELMFEKYNVPAFFLCKNSVLTAFANGRSNGLVIDSGATQT 93
Query: 193 HTVPIYEGYALPHAILRLDLA 255
VP+++GY L AI+R LA
Sbjct: 94 SAVPVHDGYVLQQAIVRSPLA 114
Score = 50.8 bits (116), Expect = 1e-06
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Frame = +2
Query: 512 GMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAFCALEHQ- 688
G + G+ + V S+ D+DIR L+ + +++GG T+ G +R+ +E+ + +
Sbjct: 146 GSTAMGVTQVVTTSVGMTDIDIRAGLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRL 205
Query: 689 --DQDHRSPREKYSVWIGGSILA 751
++ S ++++ WIGGSILA
Sbjct: 206 KLISNNSSVEKRFNPWIGGSILA 228
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 72.1 bits (169), Expect = 4e-13
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = +3
Query: 249 LGGRDLTDYLMKILTE-RGYSFTTTADREIVRDTKEKLCYVALDFEQEMATAAASTSLEK 425
+GG LT+ L + L + RG++FT+++ +IV D KEK+CY++ D +E+ + L K
Sbjct: 810 IGGHHLTENLKQYLRDQRGHNFTSSSGWQIVNDIKEKICYLSKDHLKEVHNYKTNEGLTK 869
Query: 426 SYELPDGQVITIGNERFRCPEALFQP 503
Y LPDGQ+I+IG E E LF+P
Sbjct: 870 FYTLPDGQMISIGYECISSMEPLFRP 895
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +1
Query: 121 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 252
Q LSLYASG T G+ L SG + IYEG+ L H + L++
Sbjct: 767 QLSLSLYASGMTLGVCLSSGFSCTQAAVIYEGHTLNHTLQTLEI 810
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 48.4 bits (110), Expect = 6e-06
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 16/90 (17%)
Frame = +2
Query: 530 IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEI--TAFCALEHQDQ--- 694
+ E V N I C +D+R+ LY N V+SGG+TM+ R+Q++I T L+ +
Sbjct: 223 LSEVVDNVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDIKRTVDARLKMSETLSG 282
Query: 695 DHRSPR-----------EKYSVWIGGSILA 751
P+ ++Y+VW GGS+LA
Sbjct: 283 GRIKPKPIETQVISHHMQRYAVWFGGSMLA 312
Score = 42.3 bits (95), Expect = 4e-04
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 8/55 (14%)
Frame = +1
Query: 115 AIQAVLSLYASG-------RT-TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 255
A +AVL+L AS RT TG V+DSGDGV+H +P+ EGY + I + +A
Sbjct: 40 ATKAVLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPIA 94
Score = 32.3 bits (70), Expect = 0.43
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +3
Query: 222 SAPRHPPSGLGGRDLTDYLMKILTERGYSFTTTADREIVRDTKEKLCYVALDFEQEMA 395
S +H P + GRD+T ++ ++L ER E + KE+ Y+ D +E A
Sbjct: 86 SCIKHIP--IAGRDITFFVQQLLREREMGIPPEQSMETAKTIKERWGYICPDIAKEFA 141
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 41.1 bits (92), Expect = 0.001
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Frame = +2
Query: 518 ESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAFC-ALEHQD- 691
E + + +S++ C +D RK L N V+ GGT M PG R+ +EI + +++D
Sbjct: 54 EEKSLATALLDSLLLCPIDTRKTLAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDK 113
Query: 692 ------QDHRSP-REKYSVWIGGSI 745
+ H+ P + W+GG+I
Sbjct: 114 LFIKTVKMHQPPVNANITAWLGGAI 138
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 34.7 bits (76), Expect = 0.082
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Frame = +1
Query: 61 EKMTQIMFETFNSPAMYVAIQAVLSLY------ASGRTTGIVLDSGDGVSHTVPIYEGYA 222
+ M +I+FE +N A+ A LS Y S +V+D+G +H VP++ G
Sbjct: 319 DAMDEILFEEYNFKALSRTTAAQLSAYKCHQDMVSKNPVCLVVDTGYSFTHIVPVFNGKV 378
Query: 223 LPHAILR 243
+ A+ R
Sbjct: 379 IKKAVRR 385
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +1
Query: 4 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 168
P +H V++T +E++ +I+ F A+Y+ Q++L++Y+ +GIV
Sbjct: 525 PVKHKVIMTIPQNTGLQEKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 579
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 32.3 bits (70), Expect = 0.43
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +1
Query: 157 TGIVLDSGDGVSHTVPI 207
TG V+DSGDGV+H +P+
Sbjct: 356 TGCVIDSGDGVTHVIPV 372
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 32.3 bits (70), Expect = 0.43
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = -3
Query: 588 RSLRMSTSHFMMELYTVSWMPHDSIPRRKAGREPRDNGTSRYRW*SPDRQEVRRTSRGRW 409
RS S+S Y+ S +R PR R R SP R+ R +S+
Sbjct: 616 RSQSRSSSRSRSSSYSRSRSRSPDRRKRSYSPPPRRRSPFRERRRSPPRRTSRWSSQSPD 675
Query: 408 RR---QLWPSPARSRGRHSRASP 349
RR ++ SPARSR R ASP
Sbjct: 676 RRSPARIKSSPARSRSRSQSASP 698
>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 791
Score = 31.9 bits (69), Expect = 0.57
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = -3
Query: 507 RKAGREPRDNGTSRYRW*SPDRQEVRRTSRGRWRRQLWPSPAR 379
R +GR+ RD G R W R R + R RW R P PAR
Sbjct: 605 RDSGRDGRDTG--RESWRDGARDSGRDSERKRWPRPPSPEPAR 645
>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
Length = 534
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +1
Query: 52 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 168
A +E++ +I+ F A+Y+ Q++L++Y+ +GIV
Sbjct: 420 AKKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 458
>SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1916
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 492 EPRDNGTSRYRW*SPDRQEVRRTSRGRWRR 403
E R NG R R+ PD +VR++ WRR
Sbjct: 711 ERRHNGRDRRRYGQPDSGDVRQSRTASWRR 740
>SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21)
Length = 959
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -3
Query: 579 RMSTSHFMMELYT-VSWMPHDSIPRRKAG--REPRDNGTSRYR 460
R T F++E + V+W P DS PRR+ + P +N S YR
Sbjct: 268 RTETIKFLLEYCSYVTWKPTDSQPRRRCYDIKNPCENKFSEYR 310
>SB_30638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 656 PSASCRR-YRGTWWYHRT*RCWRTGPY 579
P+ +C R Y+G WWY++ C G Y
Sbjct: 256 PTKNCARAYQGAWWYNQCHMCNPNGLY 282
>SB_55729| Best HMM Match : YajC (HMM E-Value=0.56)
Length = 654
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -3
Query: 240 EDGVGQSVTFVDGYGVGDTISGVEHDTGGTTGG 142
+DG G VDG GVGD G + D G GG
Sbjct: 9 DDGDGGGDDGVDGGGVGDDGDGDDSDCGDDGGG 41
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 55 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 204
NR + +++ E S ++ + +L+LY RT D+ + HT P
Sbjct: 437 NRVEFVKLLLENGVSMGQFLTPERLLALYRGVRTCNATPDNNNRACHTTP 486
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +3
Query: 324 DREIVRDTKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPE 488
D EI + +EK+ L+ E E A + LEK +L + +G+ER RC +
Sbjct: 2976 DLEIALE-REKIVTSDLESELETERALQANELEKQNKLLEKLSADLGHERSRCED 3029
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 526 RHPRDRVQLHHEVRRRHP*GPVRQH--RHVRWYHHVPRYRRQDAE 654
R P+DR + HH RRRH R+H H R H ++ DA+
Sbjct: 830 RPPQDRHRRHHH-RRRHHNNKHRKHSREHSRRRHQRKHHKGNDAQ 873
>SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 40 LNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 168
+ PK ++ ++F F P M +A++ + A+G TGI+
Sbjct: 174 ITPKRATSQIIFVLFCIFGLPVMMLALKTAGDIIAAGLKTGII 216
>SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)
Length = 381
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = -3
Query: 489 PRDNGTSRYRW*SPDRQEVRRTSRGRWR---RQLWPSPARSRGRHSRAS 352
PRD+ RYR DR RR SR R R R +RSR R R S
Sbjct: 282 PRDSERDRYRDIERDRHRDRRHSRDRDRKRSRSRDRRKSRSRSRDRRRS 330
>SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/65 (23%), Positives = 27/65 (41%)
Frame = -1
Query: 233 AWGRA*PS*MGTVWETPSPESSTIPVVRPEAYSESTAWMATYMAGELKVSNMIWVIFSLL 54
+W P T W +PSP+ T P ++T+W + +S++ +I L
Sbjct: 101 SWSLPLPQHKTTSWSSPSPKYKTTSWTSPSPQYKTTSWSSPLPQQTTFLSSLYHIIGRLS 160
Query: 53 ALGLR 39
+ R
Sbjct: 161 GVHYR 165
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,278,109
Number of Sequences: 59808
Number of extensions: 465202
Number of successful extensions: 1814
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1794
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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