Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0744.Seq
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             136   3e-34
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   7.1  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   9.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.4  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  136 bits (328), Expect = 3e-34
 Identities = 65/85 (76%), Positives = 71/85 (83%)
 Frame = +2

Query: 497 PAFLLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAFCA 676
           P+FL GME+CGIHET YNSIMKCDVDIRKDLYANTV+SGGTTMYPGIADRMQKEITA   
Sbjct: 39  PSFL-GMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP 97

Query: 677 LEHQDQDHRSPREKYSVWIGGSILA 751
              + +    P +KYSVWIGGSILA
Sbjct: 98  STMKIKIIAPPEKKYSVWIGGSILA 122



 Score = 90.6 bits (215), Expect = 1e-20
 Identities = 51/110 (46%), Positives = 57/110 (51%)
 Frame = +3

Query: 387 EMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFWVWNRAXXXXXXXXXXXXX 566
           EMATAA+S+SLEKSYELPDGQVITIGNERFRCPEALFQPSF                   
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 60

Query: 567 XXXXXXXXXXXXXXXXXXXXXXXXXXGCRRRSPLFAPSNIKIKIIAPPER 716
                                       ++     APS +KIKIIAPPE+
Sbjct: 61  DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEK 110


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 547 QLHHEVRRRHP*GPVRQHRH 606
           Q+HH++  +HP    +Q +H
Sbjct: 167 QMHHQMHTQHPHMQPQQGQH 186


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = -1

Query: 167 TIPVVRPEAYSESTAWMATYMAGELKVSNMIWVIFSL 57
           T+P  + E   +  AWM     G L+  N  +  F +
Sbjct: 33  TLPGYKIECVGDDIAWMKFDKEGRLRAINPEYGFFGV 69


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 547 QLHHEVRRRHP*GPVRQHR 603
           QL+ +V+  H   PV+QHR
Sbjct: 266 QLNSDVQPGHGSPPVKQHR 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,828
Number of Sequences: 438
Number of extensions: 3940
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)