Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0742.Seq
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    28   0.91 
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    28   1.2  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    27   1.6  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    27   2.1  
SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr ...    25   6.4  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    25   6.4  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    25   6.4  
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    25   6.4  
SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces pom...    25   6.4  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    25   8.5  
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    25   8.5  
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    25   8.5  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 127  HGPHELLHRVEGGEVSRAGPREPSAL 50
            HGP  L   ++GG VSR   R+ SAL
Sbjct: 1334 HGPTSLSSMLKGGSVSRTPSRQNSAL 1359


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 293 ILPIALTTSSLP-SEGGGTRGPALTVSRSRTANL 391
           I P+  +TSSLP S+GGG   PA+  S S   NL
Sbjct: 118 IPPVLHSTSSLPASQGGGMPSPAI-YSSSMATNL 150


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 527 FLHKGGHLXWLSQQALIDCSWGFGN 601
           F HK  HL WL  + L   SW + N
Sbjct: 304 FPHKARHLIWLEPEGLDPNSWWYPN 328


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 92  TFNPMKEFVRPVHDAHVHDEFERFKVKLQKQYASDLEHEKRL 217
           TF  +  FV P        ++ + K+K  K+  S  +  KRL
Sbjct: 263 TFGTLVSFVEPTITGSEQSDYRQIKIKKSKKKKSKSDRRKRL 304


>SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 200

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 477 HQLIFNGSDRSEQSPVVFRRQLYAQLLHSRFAVRE 373
           H+L  +  D  +Q+P   +RQL ++LL  R A R+
Sbjct: 24  HELKQHSRDADDQNPEQIKRQLMSKLLILREANRK 58


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
 Frame = +2

Query: 95  FNPMKEFVRPVHDAHVHDEFERFKVKLQK---QYASDLEHEKRLNIFR 229
           F  +KE  +P+ D  V  +   F +KL K   Q A DL    R    R
Sbjct: 222 FKKLKEVQQPLSDVSVPSDVLPFTIKLLKKISQRAQDLSRSHRNEFLR 269


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -2

Query: 512 PPHVPNDQHEPNTN*SLTGVTAPN-NLQSCSGGSFTLNSSTRDL 384
           P   PN  + PN N  + G+  P   L S +  S + NS+   L
Sbjct: 480 PQTFPNSGNNPNFNRGIAGIVPPGWRLVSSNTQSLSTNSAMTSL 523


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -3

Query: 142 DVGVVHGPHELLHRVEGGEVSRAGPREPSALHVTVNFEDVR 20
           D G +H P++   +V   E+S+  P   S +   V   D++
Sbjct: 2   DSGEMHHPYQAFSKVGKCEISQTNPSFSSGMRCLVRSADIQ 42


>SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 125 VHDAHVHDEFERFKVKLQKQYASDLEHEKRLN 220
           V +A +H EFE F  KLQ +      +++ LN
Sbjct: 56  VQNADIHSEFEEFLNKLQYKIPIKSVNKEHLN 87


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = -2

Query: 599 SRNPRSSR*APAG*AXTGARLCAGTARPPPPHVPNDQHEPNTN*SLTGVTAP---NNLQS 429
           S  P   R APA  A T A L   T  PPP      Q  P T  ++ G ++P    NL S
Sbjct: 6   SAAPPPRRAAPARSASTAAALPPRTMAPPPAPSRVQQAPPPT--AVQGGSSPGFFGNLVS 63

Query: 428 CSGG 417
            + G
Sbjct: 64  TAAG 67


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/60 (21%), Positives = 28/60 (46%)
 Frame = +2

Query: 74  GSRHFATFNPMKEFVRPVHDAHVHDEFERFKVKLQKQYASDLEHEKRLNIFRQSLRYIHS 253
           G +     + ++  +    D++   E E     L+K+   + EHEK +   ++ L+ +HS
Sbjct: 201 GRKDIVKLSELRNCINSSKDSNQIQELENL---LRKEKQRNTEHEKIIRRMKKELKELHS 257


>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 155 ERFKVKLQKQYASDLEHEKRLNIFRQSLRYIHSIIERTAVSP 280
           E+FK  +     +  EH ++LN+     R++ ++I+ T V+P
Sbjct: 193 EKFKQAMTFNLDALHEHAEKLNLIATYGRHLLNLIDDTPVTP 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,263,879
Number of Sequences: 5004
Number of extensions: 42644
Number of successful extensions: 158
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)