BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= pg--0742.Seq (603 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g09850.1 68414.m01109 cysteine protease, papain-like (XBCP3) ... 56 2e-08 At2g34080.1 68415.m04172 cysteine proteinase, putative contains ... 52 2e-07 At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p... 51 5e-07 At5g50260.1 68418.m06224 cysteine proteinase, putative similar t... 50 1e-06 At4g16190.1 68417.m02457 cysteine proteinase, putative contains ... 50 2e-06 At1g29080.1 68414.m03560 peptidase C1A papain family protein con... 50 2e-06 At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol pro... 49 2e-06 At5g45890.1 68418.m05644 senescence-specific SAG12 protein (SAG1... 49 3e-06 At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol p... 48 4e-06 At4g35350.2 68417.m05022 cysteine endopeptidase, papain-type (XC... 48 6e-06 At4g35350.1 68417.m05023 cysteine endopeptidase, papain-type (XC... 48 6e-06 At2g21430.1 68415.m02550 cysteine proteinase A494, putative / th... 48 6e-06 At4g39090.1 68417.m05535 cysteine proteinase RD19a (RD19A) / thi... 47 8e-06 At4g23520.1 68417.m03390 cysteine proteinase, putative contains ... 47 8e-06 At3g48350.1 68416.m05277 cysteine proteinase, putative similar t... 46 1e-05 At1g06260.1 68414.m00662 cysteine proteinase, putative contains ... 46 3e-05 At4g11320.1 68417.m01828 cysteine proteinase, putative contains ... 45 3e-05 At3g19400.2 68416.m02460 cysteine proteinase, putative non-conse... 44 6e-05 At3g19400.1 68416.m02461 cysteine proteinase, putative non-conse... 44 6e-05 At5g60360.1 68418.m07568 cysteine proteinase, putative / AALP pr... 44 1e-04 At4g36880.1 68417.m05229 cysteine proteinase, putative strong si... 44 1e-04 At3g45310.1 68416.m04892 cysteine proteinase, putative similar t... 42 2e-04 At3g49340.1 68416.m05394 cysteine proteinase, putative contains ... 42 3e-04 At1g29090.1 68414.m03561 peptidase C1A papain family protein con... 42 4e-04 At3g54940.3 68416.m06091 cysteine proteinase, putative contains ... 41 5e-04 At3g54940.2 68416.m06090 cysteine proteinase, putative contains ... 41 5e-04 At3g43960.1 68416.m04706 cysteine proteinase, putative contains ... 41 5e-04 At1g29110.1 68414.m03563 cysteine proteinase, putative contains ... 41 5e-04 At3g48340.1 68416.m05276 cysteine proteinase, putative similar t... 40 0.002 At4g11310.1 68417.m01827 cysteine proteinase, putative contains ... 39 0.003 At1g20850.1 68414.m02612 cysteine endopeptidase, papain-type (XC... 39 0.003 At2g27420.1 68415.m03314 cysteine proteinase, putative contains ... 36 0.027 At1g02305.1 68414.m00175 cathepsin B-like cysteine protease, put... 32 0.34 At2g22160.1 68415.m02632 cysteine endopeptidase-related similar ... 30 1.4 At4g01610.1 68417.m00210 cathepsin B-like cysteine protease, put... 29 1.8 At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR... 29 2.4 At4g17610.1 68417.m02633 tRNA/rRNA methyltransferase (SpoU) fami... 28 4.1 At1g66200.1 68414.m07514 glutamine synthetase, putative similar ... 28 4.1 At5g06100.2 68418.m00678 myb family transcription factor (MYB33)... 28 5.5 At5g06100.1 68418.m00677 myb family transcription factor (MYB33)... 28 5.5 At3g53090.1 68416.m05851 HECT-domain-containing protein / ubiqui... 28 5.5 At1g20225.1 68414.m02526 expressed protein 28 5.5 At1g09620.1 68414.m01079 tRNA synthetase class I (I, L, M and V)... 28 5.5 At4g08500.1 68417.m01401 mitogen-activated protein kinase kinase... 27 7.2 At5g46070.1 68418.m05665 guanylate-binding family protein contai... 27 9.6 At3g04240.1 68416.m00448 O-linked N-acetyl glucosamine transfera... 27 9.6 At1g48470.1 68414.m05418 glutamine synthetase, putative similar ... 27 9.6 >At1g09850.1 68414.m01109 cysteine protease, papain-like (XBCP3) identical to papain-like cysteine peptidase XBCP3 GI:14600257 from [Arabidopsis thaliana]; contains Pfam profiles PF00112: Papain family cysteine protease and PF00396: Granulin Length = 437 Score = 56.0 bits (129), Expect = 2e-08 Identities = 43/106 (40%), Positives = 53/106 (50%), Gaps = 6/106 (5%) Frame = +1 Query: 199 GAREEAEH-LQAVAQIHTF---HNR-ANRGFTMSVNHLADRTDDELAALR-GRRYSGPSP 360 G+ EE + +Q H F HN N +++S+N AD T E A R G S PS Sbjct: 44 GSEEERQQRIQIFKDNHDFVTQHNLITNATYSLSLNAFADLTHHEFKASRLGLSVSAPSV 103 Query: 361 HGLPFPYSKSRVEELSVKLPPEHDWRLFGAVTPVKDQLVFGSCWSF 498 SK + SVK+P DWR GAVT VKDQ G+CWSF Sbjct: 104 ----IMASKGQSLGGSVKVPDSVDWRKKGAVTNVKDQGSCGACWSF 145 >At2g34080.1 68415.m04172 cysteine proteinase, putative contains similarity to cysteine protease SPCP1 GI:13491750 from [Ipomoea batatas] Length = 345 Score = 52.4 bits (120), Expect = 2e-07 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 2/88 (2%) Frame = +1 Query: 241 IHTFHNRANRGFTMSVNHLADRTDDELAALRG--RRYSGPSPHGLPFPYSKSRVEELSVK 414 I F+ + N+ + + VN AD T++E A+ + + SP + S+ +S Sbjct: 70 IENFNKKGNKSYKLGVNEFADWTNEEFLAIHTGLKGLTEVSPSKVVAKTISSQTWNVSDM 129 Query: 415 LPPEHDWRLFGAVTPVKDQLVFGSCWSF 498 + DWR GAVTPVK Q G CW+F Sbjct: 130 VVESKDWRAEGAVTPVKYQGQCGCCWAF 157 >At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol protease, putative similar to cysteine proteinase RD21A precursor (thiol protease) GI:435619, SP:P43297 from [Arabidopsis thaliana] Length = 463 Score = 51.2 bits (117), Expect = 5e-07 Identities = 29/84 (34%), Positives = 38/84 (45%) Frame = +1 Query: 253 HNRANRGFTMSVNHLADRTDDELAALRGRRYSGPSPHGLPFPYSKSRVEELSVKLPPEHD 432 HN N + + + AD T++E ++ Y G P S + LP D Sbjct: 88 HNTKNLSYKLGLTRFADLTNEEYRSM----YLGAKPTKRVLKTSDRYQARVGDALPDSVD 143 Query: 433 WRLFGAVTPVKDQLVFGSCWSFGT 504 WR GAV VKDQ GSCW+F T Sbjct: 144 WRKEGAVADVKDQGSCGSCWAFST 167 >At5g50260.1 68418.m06224 cysteine proteinase, putative similar to cysteine endopeptidase precursor CysEP GI:2944446 from [Ricinus communis] Length = 361 Score = 50.0 bits (114), Expect = 1e-06 Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 5/96 (5%) Frame = +1 Query: 232 VAQIHTFHNRANRGFTMSVNHLADRTDDELAALRGRRYSGPS-PHGLPFPYSKSRVEELS 408 V IH N+ ++ + + +N D T +E R Y+G + H F K + Sbjct: 65 VKHIHET-NKKDKSYKLKLNKFGDMTSEEFR----RTYAGSNIKHHRMFQGEKKATKSFM 119 Query: 409 VK----LPPEHDWRLFGAVTPVKDQLVFGSCWSFGT 504 LP DWR GAVTPVK+Q GSCW+F T Sbjct: 120 YANVNTLPTSVDWRKNGAVTPVKNQGQCGSCWAFST 155 >At4g16190.1 68417.m02457 cysteine proteinase, putative contains similarity to papain-like cysteine proteinase isoform I GI:7381219 from [Ipomoea batatas] Length = 373 Score = 49.6 bits (113), Expect = 2e-06 Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 1/97 (1%) Frame = +1 Query: 211 EAEHLQAVAQIHTFHNRANRGFTMSVNHLADRTDDELAALRGRRYSGPSPHGLPFPYSKS 390 E +H V + + R N+ S H + D R++ G G P Sbjct: 71 EHDHRFRVFKANLRRARRNQLLDPSAVHGVTQFSDLTPKEFRRKFLGLKRRGFRLPTDTQ 130 Query: 391 RVEELSVK-LPPEHDWRLFGAVTPVKDQLVFGSCWSF 498 L LP E DWR GAVTPVK+Q + GSCWSF Sbjct: 131 TAPILPTSDLPTEFDWREQGAVTPVKNQGMCGSCWSF 167 Score = 36.7 bits (81), Expect = 0.012 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Frame = +2 Query: 98 NPMKEFVRPVHDAHV---HDEFERFKVKLQKQYASDLEHEKRLNIFRQSLR 241 NP+++ V +D + F FK K +K YA+ +EH+ R +F+ +LR Sbjct: 34 NPIRQVVPEENDEQLLNAEHHFTLFKSKYEKTYATQVEHDHRFRVFKANLR 84 >At1g29080.1 68414.m03560 peptidase C1A papain family protein contains similarity to cysteine protease SPCP1 GI:13491750 from [Ipomoea batatas]; contains Pfam profile PF00112: Papain family cysteine protease Length = 346 Score = 49.6 bits (113), Expect = 2e-06 Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Frame = +1 Query: 241 IHTFHNRANRGFTMSVNHLADRTDDE-LAALRGRR-YSGPSPHGLPFPYSKSRVEELSVK 414 I +F+N N+ + + VN D T +E LA G R + SP + + +S Sbjct: 70 IESFNNMGNQSYKLGVNEFTDWTKEEFLATYTGLRGVNVTSPFEVVNETKPAWNWTVSDV 129 Query: 415 LPPEHDWRLFGAVTPVKDQLVFGSCWSF 498 L DWR GAVTPVK Q G CW+F Sbjct: 130 LGTNKDWRNEGAVTPVKSQGECGGCWAF 157 >At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol protease identical to SP|P43297 Cysteine proteinase RD21A precursor (EC 3.4.22.-) {Arabidopsis thaliana}, thiol protease RD21A SP:P43297 from [Arabidopsis thaliana] Length = 462 Score = 49.2 bits (112), Expect = 2e-06 Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 1/85 (1%) Frame = +1 Query: 253 HNRANRGFTMSVNHLADRTDDELAALRGRRYSGPSPHGLPFPYSKSRVE-ELSVKLPPEH 429 HN N + + + AD T+DE + +Y G + R E + +LP Sbjct: 86 HNEKNLSYRLGLTRFADLTNDEYRS----KYLGAKMEKKGERRTSLRYEARVGDELPESI 141 Query: 430 DWRLFGAVTPVKDQLVFGSCWSFGT 504 DWR GAV VKDQ GSCW+F T Sbjct: 142 DWRKKGAVAEVKDQGGCGSCWAFST 166 >At5g45890.1 68418.m05644 senescence-specific SAG12 protein (SAG12) / cysteine proteinase, putative identical to senescence-specific protein SAG12 GI:1046373 from [Arabidopsis thaliana] Length = 346 Score = 48.8 bits (111), Expect = 3e-06 Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 2/81 (2%) Frame = +1 Query: 262 ANRGFTMSVNHLADRTDDELAAL-RGRRYSGPSPHGLPFPYSKSRVEELSV-KLPPEHDW 435 A R F ++VN AD T+DE ++ G + S R + +S LP DW Sbjct: 77 AGRTFKLAVNQFADLTNDEFRSMYTGFKGVSALSSQSQTKMSPFRYQNVSSGALPVSVDW 136 Query: 436 RLFGAVTPVKDQLVFGSCWSF 498 R GAVTP+K+Q G CW+F Sbjct: 137 RKKGAVTPIKNQGSCGCCWAF 157 >At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol protease, putative contains similarity to cysteine proteinase RD21A (thiol protease) GI:435619, SP:P43297 from [Arabidopsis thaliana] Length = 452 Score = 48.4 bits (110), Expect = 4e-06 Identities = 30/78 (38%), Positives = 40/78 (51%) Frame = +1 Query: 265 NRGFTMSVNHLADRTDDELAALRGRRYSGPSPHGLPFPYSKSRVEELSVKLPPEHDWRLF 444 NR + + + AD T+DE A+ R S +P K + ++ LP DWR Sbjct: 82 NRTYEVGLTRFADLTNDEFRAIYLR--SKMERTRVPVKGEKY-LYKVGDSLPDAIDWRAK 138 Query: 445 GAVTPVKDQLVFGSCWSF 498 GAV PVKDQ GSCW+F Sbjct: 139 GAVNPVKDQGSCGSCWAF 156 Score = 29.1 bits (62), Expect = 2.4 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Frame = +2 Query: 128 HDAHVHDEFERFKVKLQKQYASDLEHEKRLNIFRQSLRYI--HSII 259 ++A +ER+ V+ +K Y E E+R IF+ +L+++ HS I Sbjct: 35 NEAEARRMYERWLVENRKNYNGLGEKERRFEIFKDNLKFVEEHSSI 80 >At4g35350.2 68417.m05022 cysteine endopeptidase, papain-type (XCP1) identical to papain-type cysteine endopeptidase XCP1 GI:6708181 from [Arabidopsis thaliana] Length = 288 Score = 47.6 bits (108), Expect = 6e-06 Identities = 29/83 (34%), Positives = 39/83 (46%) Frame = +1 Query: 256 NRANRGFTMSVNHLADRTDDELAALRGRRYSGPSPHGLPFPYSKSRVEELSVKLPPEHDW 435 N + + +N AD T +E R + P P + R +++ LP DW Sbjct: 86 NNEINSYWLGLNEFADLTHEEFKG-RYLGLAKPQFSRKRQPSANFRYRDIT-DLPKSVDW 143 Query: 436 RLFGAVTPVKDQLVFGSCWSFGT 504 R GAV PVKDQ GSCW+F T Sbjct: 144 RKKGAVAPVKDQGQCGSCWAFST 166 >At4g35350.1 68417.m05023 cysteine endopeptidase, papain-type (XCP1) identical to papain-type cysteine endopeptidase XCP1 GI:6708181 from [Arabidopsis thaliana] Length = 355 Score = 47.6 bits (108), Expect = 6e-06 Identities = 29/83 (34%), Positives = 39/83 (46%) Frame = +1 Query: 256 NRANRGFTMSVNHLADRTDDELAALRGRRYSGPSPHGLPFPYSKSRVEELSVKLPPEHDW 435 N + + +N AD T +E R + P P + R +++ LP DW Sbjct: 86 NNEINSYWLGLNEFADLTHEEFKG-RYLGLAKPQFSRKRQPSANFRYRDIT-DLPKSVDW 143 Query: 436 RLFGAVTPVKDQLVFGSCWSFGT 504 R GAV PVKDQ GSCW+F T Sbjct: 144 RKKGAVAPVKDQGQCGSCWAFST 166 >At2g21430.1 68415.m02550 cysteine proteinase A494, putative / thiol protease, putative identical to SP:P43295 Probable cysteine proteinase A494 precursor [Arabidopsis thaliana]; strong similarity to cysteine proteinase RD19A (thiol protease) GI:435618, SP:P43296 from [Arabidopsis thaliana] Length = 361 Score = 47.6 bits (108), Expect = 6e-06 Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 1/103 (0%) Frame = +1 Query: 199 GAREEAEHLQAVAQIHTFHNRANRGFTMSVNHLADRTDDELAALRGRRYSGPSPHGLPFP 378 G+ EE + +V + + ++ S H + D + R++ G G P Sbjct: 60 GSIEEHYYRFSVFKANLLRAMRHQKMDPSARHGVTQFSDLTRSEFRRKHLGVKG-GFKLP 118 Query: 379 YSKSRVEELSVK-LPPEHDWRLFGAVTPVKDQLVFGSCWSFGT 504 ++ L + LP E DWR GAVTPVK+Q GSCWSF T Sbjct: 119 KDANQAPILPTQNLPEEFDWRDRGAVTPVKNQGSCGSCWSFST 161 >At4g39090.1 68417.m05535 cysteine proteinase RD19a (RD19A) / thiol protease identical to cysteine proteinase RD19a, thiol protease SP:P43296, GI:435618 from [Arabidopsis thaliana] Length = 368 Score = 47.2 bits (107), Expect = 8e-06 Identities = 30/82 (36%), Positives = 39/82 (47%) Frame = +1 Query: 253 HNRANRGFTMSVNHLADRTDDELAALRGRRYSGPSPHGLPFPYSKSRVEELSVKLPPEHD 432 H + + T V +D T E R + S LP +K+ + LP + D Sbjct: 85 HQKLDPSATHGVTQFSDLTRSEF---RKKHLGVRSGFKLPKDANKAPILPTE-NLPEDFD 140 Query: 433 WRLFGAVTPVKDQLVFGSCWSF 498 WR GAVTPVK+Q GSCWSF Sbjct: 141 WRDHGAVTPVKNQGSCGSCWSF 162 Score = 34.7 bits (76), Expect = 0.048 Identities = 15/32 (46%), Positives = 21/32 (65%) Frame = +2 Query: 146 DEFERFKVKLQKQYASDLEHEKRLNIFRQSLR 241 D F FK K K YAS+ EH+ R ++F+ +LR Sbjct: 49 DHFSLFKRKFGKVYASNEEHDYRFSVFKANLR 80 >At4g23520.1 68417.m03390 cysteine proteinase, putative contains similarity to cysteine proteinase (thiol protease) RD21A GI:435619, SP:P43297 from [Arabidopsis thaliana] Length = 356 Score = 47.2 bits (107), Expect = 8e-06 Identities = 28/84 (33%), Positives = 36/84 (42%) Frame = +1 Query: 253 HNRANRGFTMSVNHLADRTDDELAALRGRRYSGPSPHGLPFPYSKSRVEELSVKLPPEHD 432 HN N + + + AD T E L P P S+ V +LP D Sbjct: 82 HNAKNLSYQLGLTRFADLTVQEYRDLFP---GSPKPKQRNLKTSRRYVPLAGDQLPESVD 138 Query: 433 WRLFGAVTPVKDQLVFGSCWSFGT 504 WR GAV+ +KDQ SCW+F T Sbjct: 139 WRQEGAVSEIKDQGTCNSCWAFST 162 >At3g48350.1 68416.m05277 cysteine proteinase, putative similar to cysteine endopeptidase precursor [Ricinus communis] GI:2944446; contains Pfam profile PF00112: Papain family cysteine protease Length = 364 Score = 46.4 bits (105), Expect = 1e-05 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 1/84 (1%) Frame = +1 Query: 256 NRANRGFTMSVNHLADRTDDEL-AALRGRRYSGPSPHGLPFPYSKSRVEELSVKLPPEHD 432 N+ N+ + + +N AD T E ++ G P S + E ++P D Sbjct: 72 NKKNKPYKLKINRFADITHHEFRSSYAGSNVKHHRMLRGPKRGSGGFMYENVTRVPSSVD 131 Query: 433 WRLFGAVTPVKDQLVFGSCWSFGT 504 WR GAVT VK+Q GSCW+F T Sbjct: 132 WREKGAVTEVKNQQDCGSCWAFST 155 >At1g06260.1 68414.m00662 cysteine proteinase, putative contains similarity to thiol-protease, pre-pro-TPE4A protein GI:3688528 [Pisum sativum] Length = 343 Score = 45.6 bits (103), Expect = 3e-05 Identities = 27/91 (29%), Positives = 44/91 (48%) Frame = +1 Query: 226 QAVAQIHTFHNRANRGFTMSVNHLADRTDDELAALRGRRYSGPSPHGLPFPYSKSRVEEL 405 Q+ Q+ + N + F ++ N AD T+ E A + G + L + V + Sbjct: 68 QSNVQLIDYINSLHLPFKLTDNRFADMTNSEFKA----HFLGLNTSSLRLHKKQRPVCDP 123 Query: 406 SVKLPPEHDWRLFGAVTPVKDQLVFGSCWSF 498 + +P DWR GAVTP+++Q G CW+F Sbjct: 124 AGNVPDAVDWRTQGAVTPIRNQGKCGGCWAF 154 >At4g11320.1 68417.m01828 cysteine proteinase, putative contains similarity to cysteine proteinase RD21A (thiol protease) GI:435619, SP:P43297 from [Arabidopsis thaliana] Length = 371 Score = 45.2 bits (102), Expect = 3e-05 Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Frame = +1 Query: 247 TFHNRANRGFTMSVNHLADRTDDELAAL-RGRRYSGPSPHGLPFPYSKSRVEELSVKLPP 423 T N N + + +N AD + E + G P H ++ + + V LP Sbjct: 88 TNRNAENLSYRLGLNRFADLSLHEYGEICHGADPRPPRNHVFMTSSNRYKTSDGDV-LPK 146 Query: 424 EHDWRLFGAVTPVKDQLVFGSCWSFGT 504 DWR GAVT VKDQ + SCW+F T Sbjct: 147 SVDWRNEGAVTEVKDQGLCRSCWAFST 173 Score = 34.3 bits (75), Expect = 0.063 Identities = 21/55 (38%), Positives = 28/55 (50%) Frame = +2 Query: 83 HFATFNPMKEFVRPVHDAHVHDEFERFKVKLQKQYASDLEHEKRLNIFRQSLRYI 247 H T P + + + DA FE + VK K Y S E E+RL IF +LR+I Sbjct: 35 HHVTAGPGRR--QGIFDAEATLMFESWMVKHGKVYDSVAEKERRLTIFEDNLRFI 87 >At3g19400.2 68416.m02460 cysteine proteinase, putative non-consensus AT acceptor site at exon 3; contains similarity to cysteine protease CYP1 GI:2828252, TDI-65 GI:5726641 from [Lycopersicon esculentum] Length = 290 Score = 44.4 bits (100), Expect = 6e-05 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Frame = +1 Query: 253 HNRA-NRGFTMSVNHLADRTDDELAALRGRRYSGPSPHGLPFPYSKSRVEELSVKLPPEH 429 HN +R F + + AD T++E A+ R+ + + + +E V LP E Sbjct: 78 HNSVPDRTFEVGLTRFADLTNEEFRAIYLRKKMERTKDSVKT--ERYLYKEGDV-LPDEV 134 Query: 430 DWRLFGAVTPVKDQLVFGSCWSF 498 DWR GAV VKDQ GSCW+F Sbjct: 135 DWRANGAVVSVKDQGNCGSCWAF 157 Score = 27.1 bits (57), Expect = 9.6 Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 3/50 (6%) Frame = +2 Query: 128 HDAHVHDEFERFKVKLQKQYASDLEHEKRLNIFRQSLRYI---HSIIERT 268 ++ V +E++ V+ +K Y E E+R IF+ +L+++ +S+ +RT Sbjct: 36 NETEVRLMYEQWLVENRKNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRT 85 >At3g19400.1 68416.m02461 cysteine proteinase, putative non-consensus AT acceptor site at exon 3; contains similarity to cysteine protease CYP1 GI:2828252, TDI-65 GI:5726641 from [Lycopersicon esculentum] Length = 362 Score = 44.4 bits (100), Expect = 6e-05 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Frame = +1 Query: 253 HNRA-NRGFTMSVNHLADRTDDELAALRGRRYSGPSPHGLPFPYSKSRVEELSVKLPPEH 429 HN +R F + + AD T++E A+ R+ + + + +E V LP E Sbjct: 78 HNSVPDRTFEVGLTRFADLTNEEFRAIYLRKKMERTKDSVKT--ERYLYKEGDV-LPDEV 134 Query: 430 DWRLFGAVTPVKDQLVFGSCWSF 498 DWR GAV VKDQ GSCW+F Sbjct: 135 DWRANGAVVSVKDQGNCGSCWAF 157 Score = 27.1 bits (57), Expect = 9.6 Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 3/50 (6%) Frame = +2 Query: 128 HDAHVHDEFERFKVKLQKQYASDLEHEKRLNIFRQSLRYI---HSIIERT 268 ++ V +E++ V+ +K Y E E+R IF+ +L+++ +S+ +RT Sbjct: 36 NETEVRLMYEQWLVENRKNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRT 85 >At5g60360.1 68418.m07568 cysteine proteinase, putative / AALP protein (AALP) identical to AALP protein GI:7230640 from [Arabidopsis thaliana]; similar to barley aleurain Length = 358 Score = 43.6 bits (98), Expect = 1e-04 Identities = 29/83 (34%), Positives = 38/83 (45%) Frame = +1 Query: 256 NRANRGFTMSVNHLADRTDDELAALRGRRYSGPSPHGLPFPYSKSRVEELSVKLPPEHDW 435 N+ + + VN AD T E R G + + +V E + LP DW Sbjct: 94 NKKGLSYKLGVNQFADLTWQEFQ----RTKLGAAQNCSATLKGSHKVTEAA--LPETKDW 147 Query: 436 RLFGAVTPVKDQLVFGSCWSFGT 504 R G V+PVKDQ GSCW+F T Sbjct: 148 REDGIVSPVKDQGGCGSCWTFST 170 >At4g36880.1 68417.m05229 cysteine proteinase, putative strong similarity to cysteine proteinase COT44 precursor SP:P25251 from [Brassica napus] (Rape) Length = 376 Score = 43.6 bits (98), Expect = 1e-04 Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 4/88 (4%) Frame = +1 Query: 253 HNRANRGFT--MSVNHLADRTDDELAALR-GRRYSGPSPHGLPFPYSKSRVEELSVKLPP 423 HN N+ T + + D T+DE L G R ++ ++ K P Sbjct: 87 HNEDNKNATYKLGLTKFTDLTNDEYRKLYLGARTEPARRIAKAKNVNQKYSAAVNGKEVP 146 Query: 424 EH-DWRLFGAVTPVKDQLVFGSCWSFGT 504 E DWR GAV P+KDQ GSCW+F T Sbjct: 147 ETVDWRQKGAVNPIKDQGTCGSCWAFST 174 >At3g45310.1 68416.m04892 cysteine proteinase, putative similar to AALP protein GI:7230640 from [Arabidopsis thaliana] and barley aleurain Length = 358 Score = 42.3 bits (95), Expect = 2e-04 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Frame = +1 Query: 256 NRANRGFTMSVNHLADRTDDELAALRGRRYS-GPSPHGLPFPYSKSRVEELSVKLPPEHD 432 N+ + +S+N AD T E +RY G + + ++ E +V P D Sbjct: 94 NKKGLSYKLSLNQFADLTWQEF-----QRYKLGAAQNCSATLKGSHKITEATV--PDTKD 146 Query: 433 WRLFGAVTPVKDQLVFGSCWSFGT 504 WR G V+PVK+Q GSCW+F T Sbjct: 147 WREDGIVSPVKEQGHCGSCWTFST 170 >At3g49340.1 68416.m05394 cysteine proteinase, putative contains PS00640: Eukaryotic thiol (cysteine) proteases asparagine active site; similar to cysteine proteinase GI:535454 from [Alnus glutinosam] Length = 341 Score = 41.9 bits (94), Expect = 3e-04 Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 7/93 (7%) Frame = +1 Query: 241 IHTFHNRANRGFTMSVNHLADRTDDELAALRGRRYSG-PSPHGLPFPYSKSRVEELSVKL 417 + + + N+ +T+ VN +D TD+E A RY+G P G+ + E +S + Sbjct: 66 VESINMNTNKTYTLDVNEFSDLTDEEFKA----RYTGLVVPEGMTRISTTDSHETVSFRY 121 Query: 418 P------PEHDWRLFGAVTPVKDQLVFGSCWSF 498 DW GAVT VK Q G CW+F Sbjct: 122 ENVGETGESMDWIQEGAVTSVKHQQQCGCCWAF 154 >At1g29090.1 68414.m03561 peptidase C1A papain family protein contains similarity to cysteine protease SPCP1 GI:13491750 from [Ipomoea batatas]; contains Pfam profile PF00112: Papain family cysteine protease Length = 355 Score = 41.5 bits (93), Expect = 4e-04 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 3/91 (3%) Frame = +1 Query: 241 IHTFHNRANRGFTMSVNHLADRTDDELAALRG--RRYSG-PSPHGLPFPYSKSRVEELSV 411 I F+ + +R + + VN AD T +E A + +G PS + V Sbjct: 78 IEKFNKKGDRTYKLGVNEFADWTREEFIATHTGLKGVNGIPSSEFVDEMIPSWNWNVSDV 137 Query: 412 KLPPEHDWRLFGAVTPVKDQLVFGSCWSFGT 504 DWR GAVTPVK Q G CW+F + Sbjct: 138 AGRETKDWRYEGAVTPVKYQGQCGCCWAFSS 168 >At3g54940.3 68416.m06091 cysteine proteinase, putative contains similarity to cysteine proteinase GI:479060 from [Glycine max] Length = 368 Score = 41.1 bits (92), Expect = 5e-04 Identities = 17/30 (56%), Positives = 20/30 (66%) Frame = +1 Query: 415 LPPEHDWRLFGAVTPVKDQLVFGSCWSFGT 504 LP + DWR G VT VK+Q GSCW+F T Sbjct: 137 LPEDFDWREKGGVTEVKNQGACGSCWAFST 166 >At3g54940.2 68416.m06090 cysteine proteinase, putative contains similarity to cysteine proteinase GI:479060 from [Glycine max] Length = 211 Score = 41.1 bits (92), Expect = 5e-04 Identities = 17/30 (56%), Positives = 20/30 (66%) Frame = +1 Query: 415 LPPEHDWRLFGAVTPVKDQLVFGSCWSFGT 504 LP + DWR G VT VK+Q GSCW+F T Sbjct: 137 LPEDFDWREKGGVTEVKNQGACGSCWAFST 166 >At3g43960.1 68416.m04706 cysteine proteinase, putative contains similarity to cysteine proteinase RD21A (thiol protease) GI:435619, SP:P43297 from [Arabidopsis thaliana] Length = 376 Score = 41.1 bits (92), Expect = 5e-04 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 2/89 (2%) Frame = +1 Query: 238 QIHTFHNRANRGFTMSVNHLADRTDDEL-AALRGRRYSGPSPHGLPFPYSKSRVEELSVK 414 +I ++ NR + +N +D T DE A+ G + S + Y + +E V Sbjct: 71 RIEEHNSDPNRSYERGLNKFSDLTADEFQASYLGGKMEKKSLSDVAERY---QYKEGDV- 126 Query: 415 LPPEHDWRLFGAVTP-VKDQLVFGSCWSF 498 LP E DWR GAV P VK Q GSCW+F Sbjct: 127 LPDEVDWRERGAVVPRVKRQGECGSCWAF 155 >At1g29110.1 68414.m03563 cysteine proteinase, putative contains similarity to cysteine protease SPCP1 GI:13491750 from [Ipomoea batatas] Length = 334 Score = 41.1 bits (92), Expect = 5e-04 Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 3/86 (3%) Frame = +1 Query: 241 IHTFHNRANRGFTMSVNHLAD-RTDDELAALRGRRYSGPSPHGLPFPYSKSRVEELS-VK 414 I F+N N+ +T+ VN D +T++ LA G R + S L SR +S + Sbjct: 69 IENFNNMGNQSYTLGVNEFTDWKTEEFLATHTGLRVNVTSLSELFNKTKPSRNWNMSDID 128 Query: 415 LPPEH-DWRLFGAVTPVKDQLVFGSC 489 + E DWR GAVTPVK Q G+C Sbjct: 129 MEDESKDWRDEGAVTPVKYQ---GAC 151 >At3g48340.1 68416.m05276 cysteine proteinase, putative similar to cysteine endopeptidase precursor [Ricinus communis] GI:2944446; contains Pfam profile PF00112: Papain family cysteine protease Length = 351 Score = 39.5 bits (88), Expect = 0.002 Identities = 36/106 (33%), Positives = 46/106 (43%), Gaps = 7/106 (6%) Frame = +1 Query: 175 PEAVRERPGAREEAEHLQAVAQIHTFHNRANRGFTMSVNHLADRTDDELA-ALRG----- 336 P ++ ER H V +H N+ NR + + +N AD T +E A G Sbjct: 48 PRSLNEREKRFNVFRH--NVMHVHNT-NKKNRSYKLKLNKFADLTINEFKNAYTGSNIKH 104 Query: 337 -RRYSGPSPHGLPFPYSKSRVEELSVKLPPEHDWRLFGAVTPVKDQ 471 R GP F Y E LS KLP DWR GAVT +K+Q Sbjct: 105 HRMLQGPKRGSKQFMYDH---ENLS-KLPSSVDWRKKGAVTEIKNQ 146 >At4g11310.1 68417.m01827 cysteine proteinase, putative contains similarity to cysteine proteinase RD21A (thiol protease) GI:435619, SP:P43297 from [Arabidopsis thaliana] Length = 364 Score = 38.7 bits (86), Expect = 0.003 Identities = 18/30 (60%), Positives = 19/30 (63%) Frame = +1 Query: 415 LPPEHDWRLFGAVTPVKDQLVFGSCWSFGT 504 LP DWR GAVT VKDQ SCW+F T Sbjct: 137 LPKSVDWRNEGAVTEVKDQGHCRSCWAFST 166 Score = 35.5 bits (78), Expect = 0.027 Identities = 19/43 (44%), Positives = 25/43 (58%) Frame = +2 Query: 125 VHDAHVHDEFERFKVKLQKQYASDLEHEKRLNIFRQSLRYIHS 253 V DA FE + VK K Y S E E+RL IF +LR+I++ Sbjct: 40 VFDAEASLIFESWMVKHGKVYGSVAEKERRLTIFEDNLRFINN 82 >At1g20850.1 68414.m02612 cysteine endopeptidase, papain-type (XCP2) identical to papain-type cysteine endopeptidase XCP2 GI:6708183 from [Arabidopsis thaliana] Length = 356 Score = 38.7 bits (86), Expect = 0.003 Identities = 22/83 (26%), Positives = 38/83 (45%) Frame = +1 Query: 256 NRANRGFTMSVNHLADRTDDELAALRGRRYSGPSPHGLPFPYSKSRVEELSVKLPPEHDW 435 N+ + + + +N AD + +E + + Y++ ++ +P DW Sbjct: 86 NKKGKSYWLGLNEFADLSHEEFKKMYLGLKTDIVRRDEERSYAEFAYRDVEA-VPKSVDW 144 Query: 436 RLFGAVTPVKDQLVFGSCWSFGT 504 R GAV VK+Q GSCW+F T Sbjct: 145 RKKGAVAEVKNQGSCGSCWAFST 167 >At2g27420.1 68415.m03314 cysteine proteinase, putative contains similarity to cysteine protease SPCP1 GI:13491750 from [Ipomoea batatas] Length = 348 Score = 35.5 bits (78), Expect = 0.027 Identities = 15/23 (65%), Positives = 16/23 (69%) Frame = +1 Query: 430 DWRLFGAVTPVKDQLVFGSCWSF 498 DWR GAVTPVK Q G CW+F Sbjct: 133 DWRQEGAVTPVKYQGRCGGCWAF 155 >At1g02305.1 68414.m00175 cathepsin B-like cysteine protease, putative similar to cathepsin B-like cysteine proteinase [Nicotiana rustica] GI:609175; contains Pfam profile PF00112: Papain family cysteine protease Length = 362 Score = 31.9 bits (69), Expect = 0.34 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 5/84 (5%) Frame = +1 Query: 265 NRGFTMSVN-HLADRTDDELAALRGRRYSGPSPHGLPFPYSKSRVEELSVKLPPEHD--- 432 N G+ S N A+ T E L G + + P L P ++S+KLP E D Sbjct: 59 NAGWKASFNDRFANATVAEFKRLLGVKPT-PKTEFLGVPIVS---HDISLKLPKEFDART 114 Query: 433 -WRLFGAVTPVKDQLVFGSCWSFG 501 W ++ + DQ GSCW+FG Sbjct: 115 AWSQCTSIGRILDQGHCGSCWAFG 138 >At2g22160.1 68415.m02632 cysteine endopeptidase-related similar to cysteine endopeptidase precursor GI:2944446 from [Ricinus communis] Length = 105 Score = 29.9 bits (64), Expect = 1.4 Identities = 23/72 (31%), Positives = 31/72 (43%) Frame = +1 Query: 256 NRANRGFTMSVNHLADRTDDELAALRGRRYSGPSPHGLPFPYSKSRVEELSVKLPPEHDW 435 N+ + + + +N A+ TD E + S H SK E + P DW Sbjct: 29 NKERKPYKLKLNKFANLTDVEF--VNAHTCFDMSDHKKILD-SKPFFYENMTQAPDSLDW 85 Query: 436 RLFGAVTPVKDQ 471 R GAVT VKDQ Sbjct: 86 REKGAVTNVKDQ 97 >At4g01610.1 68417.m00210 cathepsin B-like cysteine protease, putative similar to cathepsin B-like cysteine proteinase GI:609175 from [Nicotiana rustica]; contains an unusually short, 5nt exon Length = 359 Score = 29.5 bits (63), Expect = 1.8 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 5/84 (5%) Frame = +1 Query: 265 NRGFTMSVN-HLADRTDDELAALRGRRYSGPSPHGLPFPYSKSRVEELSVKLPPEHD--- 432 N G+ ++N ++ T E L G + + P H L P + S+KLP D Sbjct: 56 NAGWKAAINDRFSNATVAEFKRLLGVKPT-PKKHFLGVPIVS---HDPSLKLPKAFDART 111 Query: 433 -WRLFGAVTPVKDQLVFGSCWSFG 501 W ++ + DQ GSCW+FG Sbjct: 112 AWPQCTSIGNILDQGHCGSCWAFG 135 >At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. Length = 1183 Score = 29.1 bits (62), Expect = 2.4 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%) Frame = -1 Query: 273 TAVR--SIMECMYLSDCLKMFSLFSCSRSLAYCF 178 T++R S M +YL++C K+FSL SL Y + Sbjct: 956 TSIRELSFMRTLYLNNCNKIFSLTDLPESLKYLY 989 >At4g17610.1 68417.m02633 tRNA/rRNA methyltransferase (SpoU) family protein similar to TAR RNA loop binding protein [Homo sapiens] GI:1184692; contains Pfam profile PF00588: SpoU rRNA Methylase (RNA methyltransferase, TrmH) family Length = 1850 Score = 28.3 bits (60), Expect = 4.1 Identities = 23/65 (35%), Positives = 30/65 (46%) Frame = -1 Query: 333 SEGSELVVSAIGKMVHGHGETAVRSIMECMYLSDCLKMFSLFSCSRSLAYCFWSLTLKRS 154 S S L +S G + ++ I EC C K+FS+ S R AY SL L S Sbjct: 260 SSQSSLKISHQGNLFILSRNGFIKRIWEC-----CKKLFSVGSIERRDAYSVLSLCL--S 312 Query: 153 NSSWT 139 + SWT Sbjct: 313 SGSWT 317 >At1g66200.1 68414.m07514 glutamine synthetase, putative similar to glutamine synthetase, cytosolic isozyme (Glutamate-- ammonia ligase, GS1) [Lotus japonicus] SWISS-PROT:Q42899 Length = 356 Score = 28.3 bits (60), Expect = 4.1 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +2 Query: 59 GFPGPGSRHFATFNPMKEFVRPVHDAH 139 GFPGP ++ + K F R + DAH Sbjct: 149 GFPGPQGPYYCSIGADKSFGRDIVDAH 175 >At5g06100.2 68418.m00678 myb family transcription factor (MYB33) contains Pfam profile: PF00249 myb DNA-binding domain Length = 520 Score = 27.9 bits (59), Expect = 5.5 Identities = 29/101 (28%), Positives = 40/101 (39%) Frame = +1 Query: 193 RPGAREEAEHLQAVAQIHTFHNRANRGFTMSVNHLADRTDDELAALRGRRYSGPSPHGLP 372 + GA + E Q + ++H NR M+ HL RTD+E+ R GLP Sbjct: 86 KKGAFSQEEE-QLIVELHA--KMGNRWARMAA-HLPGRTDNEIKNYWNTRIKRRQRAGLP 141 Query: 373 FPYSKSRVEELSVKLPPEHDWRLFGAVTPVKDQLVFGSCWS 495 + VE L R+ G +D L GSC S Sbjct: 142 LYPPEMHVEALEWSQEYAKS-RVMGEDRRHQDFLQLGSCES 181 >At5g06100.1 68418.m00677 myb family transcription factor (MYB33) contains Pfam profile: PF00249 myb DNA-binding domain Length = 451 Score = 27.9 bits (59), Expect = 5.5 Identities = 29/101 (28%), Positives = 40/101 (39%) Frame = +1 Query: 193 RPGAREEAEHLQAVAQIHTFHNRANRGFTMSVNHLADRTDDELAALRGRRYSGPSPHGLP 372 + GA + E Q + ++H NR M+ HL RTD+E+ R GLP Sbjct: 86 KKGAFSQEEE-QLIVELHA--KMGNRWARMAA-HLPGRTDNEIKNYWNTRIKRRQRAGLP 141 Query: 373 FPYSKSRVEELSVKLPPEHDWRLFGAVTPVKDQLVFGSCWS 495 + VE L R+ G +D L GSC S Sbjct: 142 LYPPEMHVEALEWSQEYAKS-RVMGEDRRHQDFLQLGSCES 181 >At3g53090.1 68416.m05851 HECT-domain-containing protein / ubiquitin-transferase family protein / IQ calmodulin-binding motif-containing protein contains Pfam profiles PF00632: HECT-domain (ubiquitin-transferase), PF00612: IQ calmodulin-binding motif Length = 1142 Score = 27.9 bits (59), Expect = 5.5 Identities = 21/67 (31%), Positives = 26/67 (38%) Frame = -1 Query: 282 HGETAVRSIMECMYLSDCLKMFSLFSCSRSLAYCFWSLTLKRSNSSWTWASCTGRTNSFI 103 H + R I CM C K+ S Y F SL + S S TWA T R S Sbjct: 104 HQKIQAREI-HCM--QTCFKILLESINSNDQGYNFCSLAVGTSEDSKTWACQTRRMVSLC 160 Query: 102 GLKVAKC 82 + +C Sbjct: 161 SFLLTEC 167 >At1g20225.1 68414.m02526 expressed protein Length = 233 Score = 27.9 bits (59), Expect = 5.5 Identities = 18/59 (30%), Positives = 28/59 (47%) Frame = +1 Query: 160 FQSQTPEAVRERPGAREEAEHLQAVAQIHTFHNRANRGFTMSVNHLADRTDDELAALRG 336 + SQT + RP EE L V +++H+ GF+ S + LA R + + RG Sbjct: 123 YNSQTQ--LMSRPAVVEELIKLGTVTLGNSYHSPLKSGFSNSKSDLATRVSFKYSVSRG 179 >At1g09620.1 68414.m01079 tRNA synthetase class I (I, L, M and V) family protein similar to cytosolic leucyl-tRNA synthetase [Candida albicans] GI:9858190; contains Pfam profile PF00133: tRNA synthetases class I (I, L, M and V) Length = 1084 Score = 27.9 bits (59), Expect = 5.5 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +2 Query: 17 DPDVFKVDSNMQCTGFPGPGSRHFATF 97 D DVF+ +S C P PG + F+TF Sbjct: 27 DEDVFRAES---CENLPKPGEKFFSTF 50 >At4g08500.1 68417.m01401 mitogen-activated protein kinase kinase, putative similar to mitogen-activated protein kinase MEKK1 GP|1255448 [Arabidopsis thaliana] Length = 608 Score = 27.5 bits (58), Expect = 7.2 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = -3 Query: 136 GVVHGPHELLHRVEGGEVSRAGP 68 GVV G + H+V+G ++S AGP Sbjct: 137 GVVVGSDSMNHKVQGQDLSEAGP 159 >At5g46070.1 68418.m05665 guanylate-binding family protein contains Pfam domains PF02263: Guanylate-binding protein, N-terminal domain and PF02841: Guanylate-binding protein, C-terminal domain Length = 1060 Score = 27.1 bits (57), Expect = 9.6 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 6/46 (13%) Frame = +2 Query: 119 RPVHDAHVH-----DEFERFKVKLQKQYASDLEHEKRL-NIFRQSL 238 R V DA H D+ ER+K++ QK+Y +K+L +I+R+ + Sbjct: 498 RSVEDAMKHLKQQLDDSERYKLEYQKRYDESNNDKKKLEDIYRERI 543 >At3g04240.1 68416.m00448 O-linked N-acetyl glucosamine transferase, putative similar to O-GlcNAc transferase, Homo sapiens [SP|O15294], Rattus norvegicus [SP|P56558]; contains Pfam profile PF00515: TPR Domain; identical to cDNA GI:18139886 Length = 977 Score = 27.1 bits (57), Expect = 9.6 Identities = 11/31 (35%), Positives = 16/31 (51%) Frame = +2 Query: 59 GFPGPGSRHFATFNPMKEFVRPVHDAHVHDE 151 GFPG + + EFV P+ AH++ E Sbjct: 699 GFPGTTGATYIDYLVTDEFVSPLQYAHIYSE 729 >At1g48470.1 68414.m05418 glutamine synthetase, putative similar to glutamine synthetase, cytosolic isozyme (glutamate-- ammonia ligase, GS1) [Arabidopsis thaliana] SWISS-PROT:Q9LVI8 Length = 353 Score = 27.1 bits (57), Expect = 9.6 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +2 Query: 59 GFPGPGSRHFATFNPMKEFVRPVHDAH 139 GFPGP ++ K F R + DAH Sbjct: 149 GFPGPQGPYYCAVGADKAFGRDIVDAH 175 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,660,301 Number of Sequences: 28952 Number of extensions: 256879 Number of successful extensions: 1121 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 1050 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1116 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1197101088 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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