Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0741.Seq
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 140 1e-34
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 133 2e-32
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 118 1e-27
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 116 3e-27
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 85 1e-17
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 54 2e-08
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 44 1e-05
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 30 0.25
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.44
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 27 1.8
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 27 2.3
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 26 4.1
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 26 5.4
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.1
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c... 25 7.1
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|... 25 9.4
SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb... 25 9.4
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 25 9.4
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p... 25 9.4
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 140 bits (340), Expect = 1e-34
Identities = 64/89 (71%), Positives = 74/89 (83%)
Frame = +2
Query: 242 PQQHIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 421
P IFDAKRLIGRKF+D VQ+DMKHWPF+V+S GKP ++V YKGE KTF PEE+SSM
Sbjct: 61 PHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSM 120
Query: 422 VLTKMKETAEAYLGKTVQNAVITVPAYFN 508
VL KM+ETAEAYLG V +AV+TVPAYFN
Sbjct: 121 VLMKMRETAEAYLGGKVTDAVVTVPAYFN 149
Score = 117 bits (281), Expect = 2e-27
Identities = 53/61 (86%), Positives = 58/61 (95%)
Frame = +3
Query: 72 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 251
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 252 T 254
T
Sbjct: 64 T 64
Score = 71.7 bits (168), Expect = 8e-14
Identities = 34/40 (85%), Positives = 36/40 (90%)
Frame = +1
Query: 511 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGE 630
SQRQATKDAG I+GLNVLRIINEPTAAAIAYGLD+ GE
Sbjct: 151 SQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQGE 190
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 133 bits (321), Expect = 2e-32
Identities = 60/89 (67%), Positives = 72/89 (80%)
Frame = +2
Query: 242 PQQHIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 421
P IFDAKRLIGR+F D VQ+DMKHWPF+V+ GKP I+V +KGE KTF PEE+SSM
Sbjct: 61 PHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSM 120
Query: 422 VLTKMKETAEAYLGKTVQNAVITVPAYFN 508
VL KM+E+AEA+LG V +AV+TVPAYFN
Sbjct: 121 VLLKMRESAEAFLGGKVTDAVVTVPAYFN 149
Score = 117 bits (281), Expect = 2e-27
Identities = 53/61 (86%), Positives = 58/61 (95%)
Frame = +3
Query: 72 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 251
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 252 T 254
T
Sbjct: 64 T 64
Score = 68.5 bits (160), Expect = 8e-13
Identities = 33/40 (82%), Positives = 35/40 (87%)
Frame = +1
Query: 511 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGE 630
SQRQATKDAG I+GLNVLRIINEPTAAAIAYGLD+ E
Sbjct: 151 SQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQHE 190
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 118 bits (283), Expect = 1e-27
Identities = 53/89 (59%), Positives = 68/89 (76%)
Frame = +2
Query: 242 PQQHIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 421
P+ +FDAKRLIGR++ED Q D+KHWPF+V+ + G P I+V Y GE K F +E+S+M
Sbjct: 65 PRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAM 124
Query: 422 VLTKMKETAEAYLGKTVQNAVITVPAYFN 508
VLTKMKE +EA L K V+ AVITVPAYF+
Sbjct: 125 VLTKMKEISEAKLNKRVEKAVITVPAYFS 153
Score = 104 bits (250), Expect = 1e-23
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +3
Query: 72 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 251
A+GIDLGTTYSCV V++ VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ AMNP N
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRN 67
Query: 252 T 254
T
Sbjct: 68 T 68
Score = 66.5 bits (155), Expect = 3e-12
Identities = 32/36 (88%), Positives = 33/36 (91%)
Frame = +1
Query: 511 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKK 618
SQR ATKDAG I+GLNVLRIINEPTAAAIAYGLD K
Sbjct: 155 SQRAATKDAGAIAGLNVLRIINEPTAAAIAYGLDAK 190
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 116 bits (279), Expect = 3e-27
Identities = 52/97 (53%), Positives = 73/97 (75%)
Frame = +2
Query: 242 PQQHIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 421
P+ IFD KRLIGRKF++ T+ D+K +PF +V+D +P ++V G+ K F PEE+S+M
Sbjct: 94 PENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAM 153
Query: 422 VLTKMKETAEAYLGKTVQNAVITVPAYFNTLKDKPQK 532
+L+KMK+TAEAYLGK V +AV+TVPAYFN + + K
Sbjct: 154 ILSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATK 190
Score = 102 bits (245), Expect = 4e-23
Identities = 45/60 (75%), Positives = 52/60 (86%)
Frame = +3
Query: 75 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNT 254
+GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ NP NT
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97
Score = 70.9 bits (166), Expect = 1e-13
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = +1
Query: 511 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERKCTY 645
+QRQATKDAGTI+GLNV+RI+NEPTAAAIAYGLDK T + Y
Sbjct: 184 AQRQATKDAGTIAGLNVIRIVNEPTAAAIAYGLDKTDTEKHIVVY 228
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 84.6 bits (200), Expect = 1e-17
Identities = 39/89 (43%), Positives = 56/89 (62%)
Frame = +2
Query: 242 PQQHIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 421
P+ F KRLIGR+F++ VQ D+K P+++V + KT+ P ++
Sbjct: 110 PENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNGD---AWLEARGKTYSPSQIGGF 166
Query: 422 VLTKMKETAEAYLGKTVQNAVITVPAYFN 508
+L+KM+ETA YLGK V+NAV+TVPAYFN
Sbjct: 167 ILSKMRETASTYLGKDVKNAVVTVPAYFN 195
Score = 78.6 bits (185), Expect = 7e-16
Identities = 36/66 (54%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Frame = +3
Query: 63 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 239
K P +GIDLGTT SC+ + + ++IAN +G RTTPS VAFT D ERL+G +AK Q +
Sbjct: 49 KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108
Query: 240 NPNNTY 257
NP NT+
Sbjct: 109 NPENTF 114
Score = 66.5 bits (155), Expect = 3e-12
Identities = 30/36 (83%), Positives = 34/36 (94%)
Frame = +1
Query: 511 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKK 618
SQRQATK AG I+GLNVLR++NEPTAAA+AYGLDKK
Sbjct: 197 SQRQATKAAGAIAGLNVLRVVNEPTAAALAYGLDKK 232
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 54.0 bits (124), Expect = 2e-08
Identities = 23/65 (35%), Positives = 41/65 (63%)
Frame = +3
Query: 60 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM 239
++ VGID G + + + V ++ +++I N+ NR+TPS V++ + R +G+AAK+ A
Sbjct: 3 SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62
Query: 240 NPNNT 254
N NT
Sbjct: 63 NFRNT 67
Score = 41.9 bits (94), Expect = 8e-05
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +2
Query: 266 KRLIGRKFEDATVQ-ADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKE 442
KRL GR ++D ++ + ++ G KV Y E+ F ++ + TK+K
Sbjct: 72 KRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQLIAAYFTKIKA 131
Query: 443 TAEAYLGKTVQNAVITVPAYFNTLK 517
AEA L +V + VI++PA+F ++
Sbjct: 132 IAEAELIGSVSDVVISIPAWFTDIQ 156
Score = 39.5 bits (88), Expect = 4e-04
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +1
Query: 514 QRQATKDAGTISGLNVLRIINEPTAAAIAYGLDK 615
QR+A +A I+GLN LR++N+ AAA+ YG+ K
Sbjct: 156 QRRALLEAANIAGLNPLRLMNDNAAAALTYGITK 189
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 44.4 bits (100), Expect = 1e-05
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = +3
Query: 75 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNT 254
+GI G S + + GK +++AN++GNR PS +++ + G A+ Q+ N +N+
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRNADNS 86
Score = 33.5 bits (73), Expect = 0.027
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 383 EDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNTLKDK 523
++K E S L ++ E+AE +LG V V++VP YF + K
Sbjct: 134 KEKILTAHEASVRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRK 180
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 30.3 bits (65), Expect = 0.25
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 75 VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 251
+ ID GT ++ + + G +EI+ R S VAF ER+ G A N P
Sbjct: 25 LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFP-- 82
Query: 252 TYSMPNV 272
+S+ NV
Sbjct: 83 AHSIRNV 89
Score = 29.1 bits (62), Expect = 0.58
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Frame = +2
Query: 242 PQQHIFDAKRLIGRK-FEDATVQADMKHWPFEVVSDGGKPKIKVAYK-GEDKTFFPEEVS 415
P I + K L+ E VQ +P + + + +++ +++ + EE+
Sbjct: 82 PAHSIRNVKELLDTAGLESVLVQKYQSSYPAIQLVENEETTSGISFVISDEENYSLEEII 141
Query: 416 SMVLTKMKETAEAYLGKTVQNAVITVPAYFNTLK 517
+M + AE + + + V+TVP +FN L+
Sbjct: 142 AMTMEHYISLAEEMAHEKITDLVLTVPPHFNELQ 175
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.5 bits (63), Expect = 0.44
Identities = 31/147 (21%), Positives = 63/147 (42%), Gaps = 11/147 (7%)
Frame = -1
Query: 642 STFSFSSTLFVKTVSNRSSSGFIDDSENVQA*DGTCIFCGLSLRVLK*AGTVITAFCTVL 463
STFS S++ + S+ SS+ S + + F S + I++ T+L
Sbjct: 571 STFSSVSSILSSSTSSPSSTSLSISSSSTSS-----TFSSASTSSPSSISSSISSSSTIL 625
Query: 462 PR*ASAVSFIFVSTMELTSSGKKVLSSPL-----------YATLILGLPPSLTTSKGQCF 316
+ S + +S+ + S +LSS + Y++ ++ +L +S
Sbjct: 626 SSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTLVSSSSSLI 685
Query: 315 MSACTVASSNLRPMRRLASNMCCWGSS 235
+S+ VASS+ P+ +S + + +S
Sbjct: 686 VSSSPVASSSSSPIPSSSSLVSTYSAS 712
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 171 PSYVAFTDTERLIGDAAKNQVAMNPNNTYSMPNVSSDVSSKMLLC 305
P +A T ER++ AAK A+N Y++ ++ D K++ C
Sbjct: 1252 PQDLAPTTIERIVDAAAKIGEALNITGPYNIQFIAKDNEIKVIEC 1296
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -1
Query: 153 GRWR*SPPSRAGIHQRKSTWYPDRFLLRVLLPFCI 49
G W SP S + +H ++++ +F +RVL C+
Sbjct: 276 GTWFASPESLSHLHDNLNSYFLLKFFVRVLFGVCM 310
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 67 HPQ*ESIWVPRTLALVYSSTGRWRSSPTTRAT 162
HP S W+P LV + W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = -3
Query: 544 WYLHLLWLVFESIEVSGNRDNCILHSFAEISFGSFLH 434
W L LW + + IE N C+ ++++ + F H
Sbjct: 396 WRLFRLWSLIDDIEPPENIVRCMCNNYSAVGFWRAWH 432
>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 156 GNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTYS 260
GNR+T ++ L DAAKN +A + TYS
Sbjct: 349 GNRSTTNFSIINSGLYLKKDAAKNLLAKQFDATYS 383
>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 25.4 bits (53), Expect = 7.1
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 385 RQNLFPRGSQFHGAYENEGNCRS--LSRQNCAECSYH-GSRLLQYSQRQATKDAGT 543
R+NLF + + +G E+E +CRS L R + + Y ++ + S Q KD T
Sbjct: 51 RENLFFKEMRTNGKNEHETSCRSVVLYRNSKSAKRYPLSTKCARISYMQGNKDTKT 106
>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 330
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 382 TLICYLDLRFASITDNLERPVLHVGLHSSIFELTSDETFGI 260
T I L + S+TDN+ER + +G + I +TS F +
Sbjct: 142 TNIALLLATYPSVTDNIER-FIFMGGSTGIGNITSQAEFNV 181
>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 281
Score = 25.0 bits (52), Expect = 9.4
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = -3
Query: 394 GFVFTLICYLDLRFASITDNLERPVLHVGLHSSIFELTSDETFGIEYVLLGFI-----AT 230
GFVFT + I + + P+L V L S FE FG V+LG
Sbjct: 104 GFVFTYLA------EQIVQDAKLPLLTVNLKSWKFEPPWPAIFGFVAVILGLSYRRMDTK 157
Query: 229 WFLAASPMRRSVS 191
+ L A+P+R S S
Sbjct: 158 YPLGAAPLRPSQS 170
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 216 AAKNQVAMNPNNTYSMPNVSSDVSSKML 299
A K Q+ +NP + +PNV D + +L
Sbjct: 323 ARKRQIQLNPFPPWDVPNVLEDQMNSLL 350
>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +3
Query: 207 IGDAAKNQVAMNPNNTYSMPNVSSD 281
+G N+V + ++TYS+P+ S+D
Sbjct: 248 VGKEVINEVENSKDDTYSLPSTSTD 272
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,851,715
Number of Sequences: 5004
Number of extensions: 61729
Number of successful extensions: 231
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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