Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0740.Seq
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    40   3e-04
SPAPJ695.01c |||S. pombe specific UPF0321 family protein 3|Schiz...    33   0.057
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    27   2.1  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    27   2.1  
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|...    27   2.8  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    26   4.9  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.9  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    25   8.6  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    25   8.6  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    25   8.6  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   8.6  

>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +2

Query: 527 IQNGFWAIKYLLVXXXXXXXXXXXXXXXASTWMVFGMIGGFCYIVIQLILIIDFAHSWAE 706
           IQNG W  K +L                +    +  ++G   +IV  L+L++DFAH+WAE
Sbjct: 125 IQNGLWPFKIVLWFVLGIFSFFIPTKFLSFWGNIISVMGSALFIVYGLMLLVDFAHTWAE 184


>SPAPJ695.01c |||S. pombe specific UPF0321 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 32.7 bits (71), Expect = 0.057
 Identities = 22/71 (30%), Positives = 33/71 (46%)
 Frame = -1

Query: 706 FSPGMCKINDKNELDNNVAEASNHSKHHPCRSKLTSWDEECSDNATNNQ*IFDGPKTILN 527
           FS G  +I   N L NNV E +N +  + C+     +  +C    TN+    D P+T  +
Sbjct: 49  FSTGDIRIGAYNYLVNNVTEINNDTDAYLCQLLTGQYTTDCYIFDTNSD---DKPETFNS 105

Query: 526 SSSWIFEDLTP 494
           S   +  DL P
Sbjct: 106 SIHLLNSDLDP 116


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = +3

Query: 468 FLLMALIMIGVKSSKIQELEFKMVFGPSNIYWLLVALSEHSSSQEVNLLRHGWC 629
           F+ M + + G+ +SK  E++ K    P+ ++ L  A  + SSSQE NLL +  C
Sbjct: 535 FIRMLMTIKGISASKAIEIQKKY---PTFMH-LFEAYEKSSSSQERNLLLNKTC 584


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = -3

Query: 296 AHNSYQH--QH*CIHKREEVELVQDGHAEQHSEQAV--LPQQHA 177
           A +S QH  +  CIH    +   QDG  EQH    V  LP  HA
Sbjct: 643 ATDSSQHVVERPCIHSLRGIHGQQDGGLEQHDGDHVNMLPDTHA 686


>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 405

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -1

Query: 553 FDGPKTILNSSSWIFEDLTPIIINAISRKKRHVANVIL*TAKYPTASSQS-TLKFPG 386
           FDG  T+      +  D  P+I   I    R +  +IL  A YP+ + Q  T +F G
Sbjct: 146 FDGDVTLYEDGQPLLPD-NPVISRLIQLLSRGIYVIILTAAGYPSRTGQEYTDRFSG 201


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 325 LCNPGAKVIQHTIVTSTSISAYISGRRWNWCKMDMLNNIV 206
           LCN G+ V+     T       +SGR W+W  M  LN+ V
Sbjct: 243 LCNVGSHVVWDQPAT-------VSGRSWSWVFMCALNSSV 275


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 541 LGHQIFIGYWWHYRSILHPRRSICFDMDGV 630
           L HQ F  +W+  R +++P R +C+ +  V
Sbjct: 544 LYHQSFSSHWFISRLLINPIRMLCWHITDV 573


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 190 HSNTLAVLQNKGPILHPFLVFISHFVCVDCDVCFMYY 80
           HS+  A   +  P+   FL FIS FV     VC++ Y
Sbjct: 88  HSSGTADNSSTSPLKKAFLSFISIFVLNVPAVCYLTY 124


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 190 HSNTLAVLQNKGPILHPFLVFISHFVCVDCDVCFMYY 80
           HS+  A   +  P+   FL FIS FV     VC++ Y
Sbjct: 88  HSSGTADNSSTSPLKKAFLSFISIFVLNVPAVCYLTY 124


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -1

Query: 634 SKHHPCRSKLTSWDEECSDNATNNQ*IFDGPKTILNSSSWIFEDLTPII--INAISRKK 464
           S+  PC    T W+ +  D+  N Q I   P+  L   +    DLT I+  I AISRKK
Sbjct: 823 SQWEPCSWLNTVWEGDLGDDELNGQ-IEAAPEMHLIKMNKT-ADLTAILKRILAISRKK 879


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -2

Query: 162  TKAQYCTHF*FLYLTLFVLIVMFVLCTTIYIPNNKYLYFDIIIRTYKYSDFL 7
            T   + TH+ + ++T+F L    V+C  IY P +++ + D  +    Y +FL
Sbjct: 1434 TMTVWTTHYVYFWVTMFAL----VICPFIYNP-HQFSFVDFFV---DYREFL 1477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,182,828
Number of Sequences: 5004
Number of extensions: 66541
Number of successful extensions: 189
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)