Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0740.Seq
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1040 - 33709588-33709880,33709960-33710200,33710498-337106...    40   0.002
04_03_0554 - 17075142-17075159,17075788-17076591,17076619-170767...    31   0.97 
07_03_1138 - 24240155-24240219,24240427-24240559,24240640-242411...    30   1.7  
08_02_1345 - 26286448-26286679,26287483-26288038,26288068-262883...    28   6.8  
08_01_1005 - 10183796-10185183,10186673-10186859                       28   6.8  
04_03_0587 - 17580954-17581080,17581088-17581272                       28   6.8  

>02_05_1040 -
           33709588-33709880,33709960-33710200,33710498-33710672,
           33710781-33710892,33711906-33712145,33712253-33712436
          Length = 414

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = +2

Query: 509 KDPRAGIQNGFWAIKYLLVXXXXXXXXXXXXXXXASTWMVFGMIGGFCYIVIQLILIIDF 688
           KDPR  I +G W  K +                  S +      G   ++++Q++L++DF
Sbjct: 105 KDPRDKIHHGGWMAK-IFCWVVIVFLMFFVPNGVVSFYESISKFGSGLFLLVQVVLLLDF 163

Query: 689 AHSWAEIWV 715
            H W E WV
Sbjct: 164 VHGWNENWV 172



 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 432 AVYRITFATCLFFLLMALIMIGVKSSK 512
           AV R++    +FF ++A+IM G+K  K
Sbjct: 79  AVLRVSLGNFVFFTILAIIMAGIKDQK 105


>04_03_0554 -
           17075142-17075159,17075788-17076591,17076619-17076719,
           17077095-17077751,17077827-17078768,17078837-17078896,
           17079131-17079763,17079886-17079942,17080177-17080702
          Length = 1265

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
 Frame = -1

Query: 664 DNNVAEASNHSKHHPCRSKLTSW-DEECSDNATNNQ*IFDG--PKTILNSSSWIFEDLTP 494
           D ++   +++S   P    +T+  DE+  D+ TN   +FDG  P ++L++ +  F   +P
Sbjct: 153 DPSICTQTSNSIDPPKEPSITNTGDEDIFDDDTNESDMFDGQAPSSMLDAGTTSFGSPSP 212

Query: 493 IIINAISRKKR 461
           ++   I R++R
Sbjct: 213 LLDPNIRRRQR 223


>07_03_1138 -
           24240155-24240219,24240427-24240559,24240640-24241182,
           24241306-24241411,24241630-24241727,24242289-24242516,
           24242990-24243307,24243411-24243695,24243706-24243771,
           24244337-24244738
          Length = 747

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -1

Query: 613 SKLTSWDEECSD--NATNNQ*IFDGPKTILNSSSWIFEDLTPIIINAISRKKRHVAN 449
           +K T   EE     N T +  I D  +T +N  + +F D+ P+ +  +  + RHV N
Sbjct: 494 NKQTDGKEESKTKANGTKDNSILD--RTKVNGDARLFSDIQPVSVAQVKERSRHVKN 548


>08_02_1345 -
           26286448-26286679,26287483-26288038,26288068-26288358,
           26288953-26290516
          Length = 880

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 688 KINDKNELDNNVAEASNHSKHHPCRSKLTSWDEEC 584
           +++ ++++D   AE +   K   CR +L+S D EC
Sbjct: 595 EVSSEHKIDTFSAEVTTEDKGKTCRYRLSSIDYEC 629


>08_01_1005 - 10183796-10185183,10186673-10186859
          Length = 524

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 550 DGPKTILNSSSWIFEDLTPIIINAISRKKRHVANVI 443
           DG +  L  +S  FED TPII N   + KR V + +
Sbjct: 475 DGSQVCLAMASLSFEDQTPIIGNYQQKNKRVVYDTV 510


>04_03_0587 - 17580954-17581080,17581088-17581272
          Length = 103

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -1

Query: 538 TILNSSSWIFEDLTPIIINAISRKKRHVANVIL*TAKYPTASSQSTLKFPGNSPVTVLSV 359
           T  NS S+    L   +IN +  K  +VA+ +    K  TA   S++  PG    +V  V
Sbjct: 30  TATNSVSFSVTTLPGFLINNLDTKPNNVADSVRRAVKVVTAEMDSSVGMPGLLDDSVAVV 89

Query: 358 A 356
           A
Sbjct: 90  A 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,810,385
Number of Sequences: 37544
Number of extensions: 407267
Number of successful extensions: 1148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)