Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0740.Seq
(745 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0) 65 5e-11
SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0) 60 1e-09
SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0) 55 5e-08
SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.035
SB_40047| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_6864| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_40853| Best HMM Match : BTB (HMM E-Value=1.4e-17) 29 4.0
SB_48092| Best HMM Match : PMG (HMM E-Value=7.6) 29 4.0
SB_31791| Best HMM Match : PIG-U (HMM E-Value=0.15) 29 4.0
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_637| Best HMM Match : HR1 (HMM E-Value=2.7e-18) 29 5.3
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_11657| Best HMM Match : bZIP_2 (HMM E-Value=3e-16) 28 9.2
>SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)
Length = 1031
Score = 65.3 bits (152), Expect = 5e-11
Identities = 32/74 (43%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +2
Query: 509 KDPRAGIQNGFWAIKYLLVXXXXXXXXXXXXXXXAST-WMVFGMIGGFCYIVIQLILIID 685
+D RA NGFW IK LL+ WM G+ GGF +I+IQL+L+ID
Sbjct: 526 EDVRAKFHNGFWYIKILLLLGLTAGSFFIPRHGQFHAFWMYIGLAGGFLFILIQLLLLID 585
Query: 686 FAHSWAEIWVLNTK 727
FAH W E WV T+
Sbjct: 586 FAHCWNESWVEKTE 599
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +3
Query: 432 AVYRITFATCLFFLLMALIMIGVKSSKIQELEFKMVFGPSNIYWLL 569
++YR+ FA +F+ LMA ++IGV++ + +F F I LL
Sbjct: 500 SLYRVCFAMAMFYFLMAFVLIGVRNEEDVRAKFHNGFWYIKILLLL 545
>SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)
Length = 1457
Score = 60.5 bits (140), Expect = 1e-09
Identities = 32/79 (40%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Frame = +2
Query: 509 KDPRAGIQNGFWAIKY-LLVXXXXXXXXXXXXXXXASTWMVFGMIGGFCYIVIQLILIID 685
K RA I NGFW IK L WM G+ GGF +I++Q++L+ID
Sbjct: 850 KQFRARIHNGFWYIKLSFLSLLLIVAFYIPFTKMFGMVWMYVGLTGGFMFILLQIVLVID 909
Query: 686 FAHSWAEIW-----VLNTK 727
F HSW+ W VLNTK
Sbjct: 910 FGHSWSASWAEKIDVLNTK 928
Score = 41.1 bits (92), Expect = 0.001
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +3
Query: 300 ITLAPGLHNELQKLPF-CTNATDSTVTGLLPGNFKVDCDEAVGYLAVYRITFATCLFFLL 476
ITL P + + K+P+ C T + CD VGY A YRI FA +F+ L
Sbjct: 790 ITLVPDMRYYIGKIPYLCDTVTSPRM-----------CDSLVGYSAAYRIYFAMTVFYFL 838
Query: 477 MALIMIGVKSSK 512
++++ V S+K
Sbjct: 839 LSILTYNVSSTK 850
>SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0)
Length = 834
Score = 55.2 bits (127), Expect = 5e-08
Identities = 26/79 (32%), Positives = 40/79 (50%)
Frame = +2
Query: 506 FKDPRAGIQNGFWAIKYLLVXXXXXXXXXXXXXXXASTWMVFGMIGGFCYIVIQLILIID 685
+ DPRA IQNG W +K+ L + W G++G F +IV+Q+IL++D
Sbjct: 422 YADPRALIQNGLWVVKFGL-FFGLLVCTFFIPLEFSRVWTYVGLLGTFFFIVMQMILLVD 480
Query: 686 FAHSWAEIWVLNTKRQNRR 742
F W + T+R +R
Sbjct: 481 FTRVWNASFARRTERTGKR 499
Score = 31.9 bits (69), Expect = 0.56
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 423 GYLAVYRITFATCLFFLLMALIMIGVKS 506
GYLAVYRI F++L A+++ V++
Sbjct: 394 GYLAVYRICLTMATFYILFAVVLYNVRT 421
>SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 526
Score = 35.9 bits (79), Expect = 0.035
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +3
Query: 408 CDEAVGYLAVYRITFATCLFFLLMALI--MIGVKSSKIQELEFKMVFGPSNIYWLLVALS 581
CD VG++ +YRI F +FFL MA++ LE + F N++ L V LS
Sbjct: 61 CDLLVGHILLYRIYFGMFVFFLFMAVVNCQASFCMGYSALLENGLWFLKWNLFCLSVLLS 120
Query: 582 EHSSSQEV-NLLRH-GW 626
E+ N+L H GW
Sbjct: 121 LLLPEGEIGNILMHTGW 137
>SB_40047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 31.5 bits (68), Expect = 0.75
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Frame = -3
Query: 254 REEVELVQDGHAEQHSEQAVLPQQHASCAAE----QRPNTAPI 138
R +VE + G QH QA PQQ A AA Q P+TAP+
Sbjct: 44 RVDVEFLHVGQKLQHKLQAAEPQQQARFAAHEAAVQAPSTAPM 86
>SB_6864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 611 ASTWMVFGMIGGFCYIVIQLILIIDFAHSWAEIWV 715
A + + G+IG FC V+ LII S+ + W+
Sbjct: 31 AILFKIAGVIGSFCVAVLPFALIIPLRKSFFDAWI 65
>SB_40853| Best HMM Match : BTB (HMM E-Value=1.4e-17)
Length = 259
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -3
Query: 263 IHKREEVELVQDGHAEQHSEQAVLPQQHASCAAEQRPNT 147
+ K E+ LV+DG+ +Q +E+ V + EQ+PN+
Sbjct: 147 LRKHEKYSLVEDGNGKQLAERRVELLEGKVATLEQKPNS 185
>SB_48092| Best HMM Match : PMG (HMM E-Value=7.6)
Length = 294
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 679 DKNELDNNVAEASNHSKHHPCRSKLTSWDEECSDNATNN 563
DKN +NN + +SN+S + S +S + + N+ NN
Sbjct: 62 DKNNNNNNNSSSSNNSNSNSSSSSSSSSNSNSNSNSNNN 100
>SB_31791| Best HMM Match : PIG-U (HMM E-Value=0.15)
Length = 1366
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 190 HSNTLAVLQNKGPI-LHPFLVFISHFVCVDCDVCFM 86
HS ++ K PI F V+I+HF C D +CF+
Sbjct: 422 HSESIG--NKKSPIETDAFEVYINHFTCTDTALCFI 455
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -1
Query: 691 CKINDKNELDNNVAEASNHSKHHPCRSKLTSWDEECSD 578
C + DK+EL + +++ HH + K WD +D
Sbjct: 157 CGMRDKDELRDKEGMREHYNAHHSGKVKREEWDRSRAD 194
>SB_637| Best HMM Match : HR1 (HMM E-Value=2.7e-18)
Length = 686
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 685 INDKNE-LDNNVAEASNHSKHHPCRSKLTSWDEECSDNA 572
+ D +E L N + EAS SKHHP + + C D++
Sbjct: 446 VQDNSEWLQNGLVEASQGSKHHPHKGNRDFKNGICHDSS 484
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = -1
Query: 703 SPGMCKINDKNELDNNVAEASNHSKHHPCRSKLTSWDEECSDNATNNQ*IFDGPKTILNS 524
+PGM ++ N+ A + S+H K + + + N + I+ P+ + +
Sbjct: 1436 NPGMLEMGRVVGKINDAAGKVSGSQHESLLHKGSELETVANSTGNNPEAIYSKPRDVEKA 1495
Query: 523 SSWIFED-LTPIIINAISRKKRHVANVIL 440
S + ED L+ + + ++RK + + IL
Sbjct: 1496 SETLSEDALSSYVKSYLNRKIESITDAIL 1524
>SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1113
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = -2
Query: 708 ISAQECAKSMIRMSWITM*QKPPIIPNTIHVEAN*PPGMKNAPIMPPITNKYLMAQKP 535
I AQEC + + + W+ M KP + + I K + + IT++Y +A P
Sbjct: 189 IFAQECCMTSL-LGWLKMADKPDFLKDLISSAIKEVHSKKRSFELSEITDEYFLASLP 245
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -1
Query: 247 RWNWCKMD--MLNNIVNKQCCHSNTLAVLQNKGPILHPFLVFISH 119
+W +C + +L N + C AV+ +K P L+P + +I++
Sbjct: 3681 KWEFCSLAFMVLENCYSVACYSDELCAVVPSKSPQLNPRIAYINN 3725
>SB_11657| Best HMM Match : bZIP_2 (HMM E-Value=3e-16)
Length = 298
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 259 ISGRRWNWCKMDMLNNIVNKQCCHSNT 179
+SG R N C + NN+VNK+ +SN+
Sbjct: 55 VSGVRENQCDDGLQNNMVNKKSINSNS 81
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,335,101
Number of Sequences: 59808
Number of extensions: 486046
Number of successful extensions: 1264
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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