Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0740.Seq
(745 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024832-6|AAL27256.1| 459|Caenorhabditis elegans Hypothetical ... 73 2e-13
Z93386-1|CAB07645.1| 442|Caenorhabditis elegans Hypothetical pr... 66 2e-11
AC024832-7|AAL27257.1| 389|Caenorhabditis elegans Hypothetical ... 40 0.002
Z68219-8|CAD59155.1| 430|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z68219-1|CAA92481.2| 387|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z68216-7|CAD59147.1| 430|Caenorhabditis elegans Hypothetical pr... 28 6.1
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ... 28 6.1
Z73973-1|CAA98266.1| 357|Caenorhabditis elegans Hypothetical pr... 28 8.0
>AC024832-6|AAL27256.1| 459|Caenorhabditis elegans Hypothetical
protein Y57E12AL.1a protein.
Length = 459
Score = 72.9 bits (171), Expect = 2e-13
Identities = 34/69 (49%), Positives = 42/69 (60%)
Frame = +2
Query: 509 KDPRAGIQNGFWAIKYLLVXXXXXXXXXXXXXXXASTWMVFGMIGGFCYIVIQLILIIDF 688
KD R+ IQNGFW KYL++ A+ M G+IGGF +I+IQLILI+DF
Sbjct: 118 KDGRSSIQNGFWFFKYLILGALIVGFFFIRSESLATPLMYIGLIGGFMFILIQLILIVDF 177
Query: 689 AHSWAEIWV 715
AH AE WV
Sbjct: 178 AHGLAEAWV 186
Score = 52.4 bits (120), Expect = 3e-07
Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +3
Query: 285 TIVCCITLAPGLHNELQKLP-FCTNATDSTVTGLLPGNFKVDCDEAVGYLAVYRITFATC 461
T + CI L PG+ N+L + FC + + C A G+ AVYR+ AT
Sbjct: 51 TFLSCIMLLPGIQNKLAENKWFCEGLNEYA---------GISCAHATGFQAVYRVCAATA 101
Query: 462 LFFLLMALIMIGVKSSK 512
F+LL LIMIGVK SK
Sbjct: 102 SFYLLFMLIMIGVKDSK 118
>Z93386-1|CAB07645.1| 442|Caenorhabditis elegans Hypothetical
protein R11H6.2 protein.
Length = 442
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/66 (48%), Positives = 39/66 (59%)
Frame = +2
Query: 509 KDPRAGIQNGFWAIKYLLVXXXXXXXXXXXXXXXASTWMVFGMIGGFCYIVIQLILIIDF 688
KD R+ IQNGFW KYLL+ A+ M GM+G F +I+IQLILI+DF
Sbjct: 118 KDGRSSIQNGFWFFKYLLMFGIIGGFFFIGSETLATPLMYIGMLGAFLFILIQLILIVDF 177
Query: 689 AHSWAE 706
AH AE
Sbjct: 178 AHGLAE 183
Score = 44.8 bits (101), Expect = 7e-05
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +3
Query: 402 VDCDEAVGYLAVYRITFATCLFFLLMALIMIGVKSSK 512
V+C+ A+GY AVYR+ FF L L+M GV SSK
Sbjct: 82 VNCEHAIGYQAVYRVCAGAASFFFLFMLLMFGVSSSK 118
>AC024832-7|AAL27257.1| 389|Caenorhabditis elegans Hypothetical
protein Y57E12AL.1b protein.
Length = 389
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 285 TIVCCITLAPGLHNELQKLP-FCTNATDSTVTGLLPGNFKVDCDEAVGYLAVYRITFATC 461
T + CI L PG+ N+L + FC + + C A G+ AVYR+ AT
Sbjct: 51 TFLSCIMLLPGIQNKLAENKWFCEGLNEYA---------GISCAHATGFQAVYRVCAATA 101
Query: 462 LFFLLMALIM 491
F+LL LI+
Sbjct: 102 SFYLLFILIV 111
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 671 ILIIDFAHSWAEIWV 715
ILI+DFAH AE WV
Sbjct: 108 ILIVDFAHGLAEAWV 122
>Z68219-8|CAD59155.1| 430|Caenorhabditis elegans Hypothetical
protein T05A1.1a protein.
Length = 430
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = -1
Query: 229 MDMLNNIVNKQCCHSNTLAVLQNKGPILHPFLVFISHFVCVDCDVCFMYYNLHSK 65
++ LN + + C LA ++ KG + FLV I+ F+ + F YYN+ S+
Sbjct: 208 VEKLNGLCGEYCSEHWPLAEVR-KG---YTFLVLITQFLFPFATMAFCYYNIFSR 258
>Z68219-1|CAA92481.2| 387|Caenorhabditis elegans Hypothetical
protein T05A1.1b protein.
Length = 387
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = -1
Query: 229 MDMLNNIVNKQCCHSNTLAVLQNKGPILHPFLVFISHFVCVDCDVCFMYYNLHSK 65
++ LN + + C LA ++ KG + FLV I+ F+ + F YYN+ S+
Sbjct: 165 VEKLNGLCGEYCSEHWPLAEVR-KG---YTFLVLITQFLFPFATMAFCYYNIFSR 215
>Z68216-7|CAD59147.1| 430|Caenorhabditis elegans Hypothetical
protein T05A1.1a protein.
Length = 430
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = -1
Query: 229 MDMLNNIVNKQCCHSNTLAVLQNKGPILHPFLVFISHFVCVDCDVCFMYYNLHSK 65
++ LN + + C LA ++ KG + FLV I+ F+ + F YYN+ S+
Sbjct: 208 VEKLNGLCGEYCSEHWPLAEVR-KG---YTFLVLITQFLFPFATMAFCYYNIFSR 258
>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
protein H11E01.3 protein.
Length = 1464
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 299 TAHNSYQHQH*CIHKREEVELVQDGHAEQHSEQAVLPQQHAS 174
+ H+S+ +H + V V HA +H EQ LP AS
Sbjct: 574 SVHSSHASEHIDEAPQSPVPSVHSSHASEHIEQEALPSPVAS 615
>Z73973-1|CAA98266.1| 357|Caenorhabditis elegans Hypothetical
protein F25D1.2 protein.
Length = 357
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = -1
Query: 535 ILNSSSWIFEDLTPIIINAISRKKRHVANVIL*TAKYPTASSQSTLKFPGNSPVTVLS 362
+ NS + E ++P ++A + +IL +YPT T+ GN+P V S
Sbjct: 133 LANSMFLLSELISPTFLSAGLTASAGILYLILRPDEYPTEECTETVSIDGNTPEPVKS 190
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,675,907
Number of Sequences: 27780
Number of extensions: 377976
Number of successful extensions: 1158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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