Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0740.Seq
(745 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g16180.1 68414.m01938 TMS membrane family protein / tumour di... 44 1e-04
At3g06170.1 68416.m00709 TMS membrane family protein / tumour di... 34 0.087
At5g24530.1 68418.m02897 oxidoreductase, 2OG-Fe(II) oxygenase fa... 29 4.3
At1g60630.1 68414.m06825 leucine-rich repeat family protein simi... 29 4.3
At5g62470.2 68418.m07840 myb family transcription factor (MYB96)... 28 5.7
At5g62470.1 68418.m07839 myb family transcription factor (MYB96)... 28 5.7
At5g53620.2 68418.m06662 expressed protein 28 5.7
At5g53620.1 68418.m06661 expressed protein 28 5.7
At2g18690.1 68415.m02177 expressed protein 28 7.5
At3g02150.2 68416.m00185 TCP family transcription factor, putati... 27 9.9
At3g02150.1 68416.m00184 TCP family transcription factor, putati... 27 9.9
At1g51910.1 68414.m05851 protein kinase family protein contains ... 27 9.9
>At1g16180.1 68414.m01938 TMS membrane family protein / tumour
differentially expressed (TDE) family protein contains
Pfam domain, PF03348: TMS membrane protein/tumour
differentially expressed protein (TDE)
Length = 412
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +2
Query: 509 KDPRAGIQNGFWAIKYLLVXXXXXXXXXXXXXXXASTWMVFGMIGGFCYIVIQLILIIDF 688
KDPR GI +G W +K ++ S + G ++++Q++L++DF
Sbjct: 105 KDPRDGIHHGGWMMK-IICWCILVIFMFFLPNEIISFYESMSKFGAGFFLLVQVVLLLDF 163
Query: 689 AHSWAEIWV 715
H W + WV
Sbjct: 164 VHGWNDTWV 172
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +3
Query: 432 AVYRITFATCLFFLLMALIMIGVKSSK 512
AV R++ LFF +++++MIGVK+ K
Sbjct: 79 AVLRVSLGNFLFFSILSVMMIGVKNQK 105
>At3g06170.1 68416.m00709 TMS membrane family protein / tumour
differentially expressed (TDE) family protein contains
Pfam domain, PF03348: TMS membrane protein/tumour
differentially expressed protein (TDE)
Length = 409
Score = 34.3 bits (75), Expect = 0.087
Identities = 15/68 (22%), Positives = 30/68 (44%)
Frame = +2
Query: 512 DPRAGIQNGFWAIKYLLVXXXXXXXXXXXXXXXASTWMVFGMIGGFCYIVIQLILIIDFA 691
D R +G W +K ++V S + G ++++Q++L++D
Sbjct: 103 DRRDSWHHGGWGLK-MIVWFLLVVLMFFVPNVIVSLYGTLSKFGAGAFLLVQVVLLLDAT 161
Query: 692 HSWAEIWV 715
H+W + WV
Sbjct: 162 HNWNDSWV 169
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +3
Query: 432 AVYRITFATCLFFLLMALIMIGVK 503
AV R++F LFF + ALIMIGVK
Sbjct: 76 AVLRVSFGNFLFFAIYALIMIGVK 99
>At5g24530.1 68418.m02897 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to flavanone 3-hydroxylase
[Persea americana][GI:727410]; contains PF03171
2OG-Fe(II) oxygenase superfamily domain
Length = 341
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/17 (64%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
Frame = +1
Query: 634 NDWR--LLLHCYPTHSY 678
N+WR L LHCYP H Y
Sbjct: 121 NNWRDYLRLHCYPIHKY 137
>At1g60630.1 68414.m06825 leucine-rich repeat family protein similar
to receptor kinase GI:498278 from [Petunia
integrifolia]; contains protein kinase domain,
Pfam:PF00069; contains leucine-rich repeats,
Pfam:PF00560
Length = 652
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = +3
Query: 444 ITFATCLFFLLMALIMIG-VKSSKIQE-LEFKMVFGPSN-IYW 563
I+ ++C+FFL+ A +I V+SS ++ L K PSN I W
Sbjct: 2 ISSSSCMFFLVFAFFLISPVRSSDVEALLSLKSSIDPSNSIPW 44
>At5g62470.2 68418.m07840 myb family transcription factor (MYB96)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 352
Score = 28.3 bits (60), Expect = 5.7
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Frame = -1
Query: 715 NPYFSPGMCKINDKNELDNNVAEASNHS--KHHPCRSKLTSW------DEECSDNATNNQ 560
N + + KIN+ E DN+ +SN S K+H +K W D + A
Sbjct: 109 NTHLKKKLKKINESGEEDNDGVSSSNTSSQKNHQSTNK-GQWERRLQTDINMAKQALCEA 167
Query: 559 *IFDGPKTILNSSSWIFEDLTPIIINAISRKKRHVANVIL*TAKYPTASSQST 401
D P + L+SSS + TP+I + R+ ++ +L P++SS ST
Sbjct: 168 LSLDKPSSTLSSSSSL---PTPVI---TQQNIRNFSSALLDRCYDPSSSSSST 214
>At5g62470.1 68418.m07839 myb family transcription factor (MYB96)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 351
Score = 28.3 bits (60), Expect = 5.7
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Frame = -1
Query: 715 NPYFSPGMCKINDKNELDNNVAEASNHS--KHHPCRSKLTSW------DEECSDNATNNQ 560
N + + KIN+ E DN+ +SN S K+H +K W D + A
Sbjct: 108 NTHLKKKLKKINESGEEDNDGVSSSNTSSQKNHQSTNK-GQWERRLQTDINMAKQALCEA 166
Query: 559 *IFDGPKTILNSSSWIFEDLTPIIINAISRKKRHVANVIL*TAKYPTASSQST 401
D P + L+SSS + TP+I + R+ ++ +L P++SS ST
Sbjct: 167 LSLDKPSSTLSSSSSL---PTPVI---TQQNIRNFSSALLDRCYDPSSSSSST 213
>At5g53620.2 68418.m06662 expressed protein
Length = 682
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 263 IHKREEVELVQDGHAEQHSEQAVLPQQHASCAAE 162
+H++E +LVQ QH EQ+VL QQ A +
Sbjct: 388 MHQQEISQLVQPQVPSQHIEQSVLLQQKAQAVPD 421
>At5g53620.1 68418.m06661 expressed protein
Length = 682
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 263 IHKREEVELVQDGHAEQHSEQAVLPQQHASCAAE 162
+H++E +LVQ QH EQ+VL QQ A +
Sbjct: 388 MHQQEISQLVQPQVPSQHIEQSVLLQQKAQAVPD 421
>At2g18690.1 68415.m02177 expressed protein
Length = 322
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/38 (23%), Positives = 21/38 (55%)
Frame = +3
Query: 426 YLAVYRITFATCLFFLLMALIMIGVKSSKIQELEFKMV 539
Y+A++ + F F +L +++ +KS ++ + F V
Sbjct: 148 YIALFSLGFGFLFFIILCPILLFSIKSGSVENIGFLAV 185
>At3g02150.2 68416.m00185 TCP family transcription factor, putative
similar to transcription factor PCF6 [Oryza sativa
(japonica cultivar-group)] GI:20975255; contains Pfam
profile PF03634: TCP family transcription factor
Length = 355
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/60 (30%), Positives = 23/60 (38%)
Frame = -3
Query: 299 TAHNSYQHQH*CIHKREEVELVQDGHAEQHSEQAVLPQQHASCAAEQRPNTAPIFSFYIS 120
T HN +H H H + + L D H+ Q P Q C P T I S + S
Sbjct: 206 TYHN-LEHHH---HHHQHLSLQADYHSHQLHSLVPFPSQILVCPMTTSPTTTTIQSLFPS 261
>At3g02150.1 68416.m00184 TCP family transcription factor, putative
similar to transcription factor PCF6 [Oryza sativa
(japonica cultivar-group)] GI:20975255; contains Pfam
profile PF03634: TCP family transcription factor
Length = 278
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/60 (30%), Positives = 23/60 (38%)
Frame = -3
Query: 299 TAHNSYQHQH*CIHKREEVELVQDGHAEQHSEQAVLPQQHASCAAEQRPNTAPIFSFYIS 120
T HN +H H H + + L D H+ Q P Q C P T I S + S
Sbjct: 206 TYHN-LEHHH---HHHQHLSLQADYHSHQLHSLVPFPSQILVCPMTTSPTTTTIQSLFPS 261
>At1g51910.1 68414.m05851 protein kinase family protein contains
Serine/Threonine protein kinases active-site signature,
PROSITE:PS00108
Length = 876
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +1
Query: 496 VSNLQRSKSWNSKWFLGHQIFIGYWWHYRSILHPRRSICFDMDGVWNDWRLLLHCYPTHS 675
V + R K+ + W +G ++ G R+I+ P+ FD +GVW L L C S
Sbjct: 771 VIDTTREKAHITDW-VGFKLMEG---DIRNIIDPKLIKEFDTNGVWKAVELALSCVNPTS 826
Query: 676 YH 681
H
Sbjct: 827 NH 828
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,269,557
Number of Sequences: 28952
Number of extensions: 341183
Number of successful extensions: 867
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -