Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0739.Seq
         (743 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2QV87 Cluster: Expressed protein; n=3; Oryza sativa|Re...    34   4.2  
UniRef50_Q7RKX4 Cluster: Putative uncharacterized protein PY0277...    33   9.8  

>UniRef50_Q2QV87 Cluster: Expressed protein; n=3; Oryza sativa|Rep:
            Expressed protein - Oryza sativa subsp. japonica (Rice)
          Length = 1174

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +1

Query: 256  WDVCRVIGNETGKLRDEKTQNWNAKRQNRDGLLGLSLISN 375
            W V + I N+  ++ DE TQN + +R  RD  LG+ + S+
Sbjct: 909  WSVAQAIVNDDCEVEDEVTQNQDKERMARDDNLGVDMCSS 948


>UniRef50_Q7RKX4 Cluster: Putative uncharacterized protein PY02775;
           n=1; Plasmodium yoelii yoelii|Rep: Putative
           uncharacterized protein PY02775 - Plasmodium yoelii
           yoelii
          Length = 414

 Score = 32.7 bits (71), Expect = 9.8
 Identities = 13/55 (23%), Positives = 31/55 (56%)
 Frame = +3

Query: 81  NFKKKVILSLFFQ*DHSLYKFLIHLEIPQQTVSCNILILNTIFRQNKKCIFFPFF 245
           N  KK++ S+  Q D + + +++ + + +Q ++CN   +  +  Q KK ++  F+
Sbjct: 222 NENKKIVFSVVKQIDDAKFLYILKIILKEQNINCNQNKIKVLKVQKKKILYKTFY 276


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 646,919,457
Number of Sequences: 1657284
Number of extensions: 12258443
Number of successful extensions: 25931
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25910
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60911752460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)