Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0739.Seq
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po...    28   1.6  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    27   2.1  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   4.9  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   8.6  

>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 171 FVVVFPGVLKTYINCDLIEKTT 106
           F+ + PGV+KT +N D I+K T
Sbjct: 183 FISIHPGVVKTDMNADAIKKFT 204


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 68  KQLK-EL*KKSNIIVVFSIRSQFI*VFNTPGNTTTNGKLQYSYFKYNISTK 217
           KQ+K +L   S+I     + +  I VFN   N T NGK   S F  N++ K
Sbjct: 374 KQMKKQLADTSSITSPLCLNTSSI-VFNATVNFTRNGKFNTSIFSSNLNPK 423


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 352 TSHPYFVFWRSNFVFSRP*VFQSRSQLPYIRPNFP 248
           TS+P ++   SN     P  FQ+ SQ PY  P FP
Sbjct: 734 TSYPPYMSPTSNM----PQAFQAYSQYPYQHPPFP 764


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 229  YFFLSFWGNWDVCRVIGNET 288
            YFF SFW  +DV   +G+ T
Sbjct: 1326 YFFHSFWNMFDVVVTLGSLT 1345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,474
Number of Sequences: 5004
Number of extensions: 58340
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)