Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0739.Seq
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768...    34   0.14 
12_01_0278 - 2016172-2016262,2017057-2017140,2017701-2017837,201...    29   3.9  
07_03_1192 + 24698355-24698433,24699312-24699391,24700027-247004...    28   9.0  
04_04_0484 - 25570798-25570964,25572641-25572679,25572718-255728...    28   9.0  

>12_01_0830 -
           7678038-7678444,7678996-7680943,7681231-7681983,
           7682701-7682824,7683590-7683723
          Length = 1121

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +1

Query: 256 WDVCRVIGNETGKLRDEKTQNWNAKRQNRDGLLGLSLISN 375
           W V + I N+  ++ DE TQN + +R  RD  LG+ + S+
Sbjct: 856 WSVAQAIVNDDCEVEDEVTQNQDKERMARDDNLGVDMCSS 895


>12_01_0278 -
           2016172-2016262,2017057-2017140,2017701-2017837,
           2017961-2018230,2018306-2018430,2018515-2018646,
           2018744-2018821,2019177-2019220,2019803-2019981,
           2020168-2020428,2020528-2020655,2020749-2020853,
           2020932-2021073
          Length = 591

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
 Frame = +1

Query: 208 FDKIKNVYFFLSFWGNWDVCRVIGNETGKLRDEKTQNWNAKRQNRDGLL--GLSLISNNR 381
           F+  K  +    F+  W+ C  I      LRD   +N  A+    + LL   L  +   +
Sbjct: 355 FNGDKRTFACTGFFIEWNECATILTSANLLRDSSDENRIAENLRIEVLLPNNLRTVGTVQ 414

Query: 382 FFSLYYHLIA*CKEG*CVYQLVYVSIIG 465
            ++L+Y++     +  CV Q V +   G
Sbjct: 415 HYNLHYNVALVSVKDHCVRQPVKIQPYG 442


>07_03_1192 +
           24698355-24698433,24699312-24699391,24700027-24700483,
           24700641-24700794,24700878-24701155,24701225-24701517
          Length = 446

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 348 AIPILSFGVPILCFLVPKFSSLVPNYPTYVPISP 247
           A+ +L  GV +   LV  FSSL+P+   Y P+ P
Sbjct: 2   ALLLLRMGVSV-ALLVAFFSSLIPSSEAYDPLDP 34


>04_04_0484 -
           25570798-25570964,25572641-25572679,25572718-25572869,
           25572975-25573090,25573196-25573363,25574202-25574300,
           25574450-25574650,25575369-25575689
          Length = 420

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 297 KFSSLVPNYPTYVPISPKRKEK 232
           ++ SL+P  P +V  SPKRKEK
Sbjct: 306 RWISLLPRQPEFVFSSPKRKEK 327


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,807,327
Number of Sequences: 37544
Number of extensions: 283099
Number of successful extensions: 463
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)