Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0739.Seq
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43253| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_42362| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_43253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 224 MYIFSFLFGEIGTYVG*LGTRLENLGTRKHKIGTPKDKIGMA 349
           +Y   +    IGT +  +GT +  +GT K+ +GT  + IG A
Sbjct: 26  IYCMGYTVNYIGTAIYCMGTTVNYIGTAKYCMGTTVNYIGTA 67


>SB_42362| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 235 FLSFWGNWDVCRVIGNETGKLRDEKTQNWNAKRQN 339
           F+  W N ++ R + N   KLR+     W A++ +
Sbjct: 278 FIYCWRNREIKRAVQNTLAKLRETLLSRWTAQKNS 312


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,858,938
Number of Sequences: 59808
Number of extensions: 377680
Number of successful extensions: 1005
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)