Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0739.Seq
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23528-8|AAK31386.2|  293|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AF101310-4|AAC69214.2|  662|Caenorhabditis elegans Hypothetical ...    28   8.0  
AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trn...    28   8.0  
AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trn...    28   8.0  

>U23528-8|AAK31386.2|  293|Caenorhabditis elegans Hypothetical
           protein B0034.5 protein.
          Length = 293

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 349 LLGLSLISNNRFFSLYYHLI 408
           LL +SLI NNR F  Y+H I
Sbjct: 32  LLFISLIRNNRCFKCYFHFI 51


>AF101310-4|AAC69214.2|  662|Caenorhabditis elegans Hypothetical
           protein C39F7.5 protein.
          Length = 662

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/43 (30%), Positives = 27/43 (62%)
 Frame = +3

Query: 63  F*NSLKNFKKKVILSLFFQ*DHSLYKFLIHLEIPQQTVSCNIL 191
           F + L+N+ ++V L +  +      + LI L+IP++ +SC++L
Sbjct: 603 FTSLLRNYHRRVALEMIIR------RTLIELDIPEECISCHLL 639


>AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform a protein.
          Length = 909

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 473 KYIYNYFFFATFPCNICPVVCSL 541
           KYIY+ F F     N C  VCSL
Sbjct: 65  KYIYSPFIFCHRTANSCVAVCSL 87


>AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform b protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 473 KYIYNYFFFATFPCNICPVVCSL 541
           KYIY+ F F     N C  VCSL
Sbjct: 65  KYIYSPFIFCHRTANSCVAVCSL 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,491,984
Number of Sequences: 27780
Number of extensions: 312237
Number of successful extensions: 642
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)