Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0738.Seq
         (782 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50789| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_26081| Best HMM Match : Ribosomal_S8 (HMM E-Value=3.8)              28   7.4  

>SB_50789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 777

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 431 SAC*KWADGTVLCHIYKFCVKRQLYKSV*QILKIVIS 541
           SA  +W  G++ C +Y FC K  +Y S+  I  I ++
Sbjct: 194 SALGRWVYGSLGCQLYGFCSKFLVYVSIYTISLIALN 230


>SB_26081| Best HMM Match : Ribosomal_S8 (HMM E-Value=3.8)
          Length = 426

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
 Frame = +3

Query: 399 KKNTYSKYDNIQHARNGLMALYYA---ISISFASNDNFI---NQCSKF*KSSYRLLGKFE 560
           K+N YSKY +++++  G M+   A    SI   +   F      C    K  Y L GKF 
Sbjct: 22  KENIYSKYKSLKYSVQGCMSSCLANSEFSICNCTEGKFRVKGRPCFSESKGKYMLKGKFR 81

Query: 561 ART 569
            +T
Sbjct: 82  VKT 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,259,157
Number of Sequences: 59808
Number of extensions: 395974
Number of successful extensions: 785
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)