Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0738.Seq
         (782 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    28   6.1  
At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d...    28   8.0  
At3g28180.1 68416.m03521 glycosyl transferase family 2 protein s...    28   8.0  

>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
            contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
            PF04815: Sec23/Sec24 helical domain and PF04810:
            Sec23/Sec24 zinc finger
          Length = 1096

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 156  KLFYLNSSEEILSVAFFPKYLNRMSKYFDDI 64
            KLF + S+ E+ S     KY N++SK F+D+
Sbjct: 1007 KLFNVRSAAELPSQYVLQKYDNQLSKKFNDV 1037


>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
            domain-containing protein similar to eukaryotic protein
            synthesis initiation factor [Homo sapiens] GI:3941724;
            contains Pfam profiles PF02854: MIF4G domain, PF02847:
            MA3 domain
          Length = 1544

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = -1

Query: 353  VTHYRSAPQGRCTALPHRTQILNLSR 276
            VTH RS+PQ R TA  HR +  +LSR
Sbjct: 1298 VTHGRSSPQERGTAYVHR-EFASLSR 1322


>At3g28180.1 68416.m03521 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 673

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 247 FCSVFFIRRSLDKFKICVRC 306
           FC+V F+ +SLD+  +C+ C
Sbjct: 154 FCTVLFLIQSLDRLVLCLGC 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,767,234
Number of Sequences: 28952
Number of extensions: 274994
Number of successful extensions: 459
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)