Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0736.Seq
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48007-1|CAA88052.1| 1140|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z46267-2|CAC42301.1|  600|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AF228712-1|AAF34798.1|   91|Caenorhabditis elegans molybdenum co...    29   4.0  
Z49073-5|CAA88890.1| 1122|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical pr...    28   7.0  

>Z48007-1|CAA88052.1| 1140|Caenorhabditis elegans Hypothetical
           protein R134.1 protein.
          Length = 1140

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/17 (64%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
 Frame = +1

Query: 499 WHFWGNVR--GTPICLF 543
           WHFWG +R   TPIC F
Sbjct: 465 WHFWGGIRPLATPICGF 481


>Z46267-2|CAC42301.1|  600|Caenorhabditis elegans Hypothetical
           protein F49E2.1b protein.
          Length = 600

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 156 RDRVECCSSLEQESTIKERGLQRQRAKNRLSGRGPLREPS 275
           RDR+ C  S EQ S + ++ +  ++A++ +   G   EP+
Sbjct: 343 RDRIRCGDSDEQLSEVIQKAVNNKKARHAVFRNGRSEEPA 382


>AF228712-1|AAF34798.1|   91|Caenorhabditis elegans molybdenum
           cofactor synthesis-step1 protein MOCS1A-B protein.
          Length = 91

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 156 RDRVECCSSLEQESTIKERGLQRQRAKNRLSGRGPLREPS 275
           RDR+ C  S EQ S + ++ +  ++A++ +   G   EP+
Sbjct: 21  RDRIRCGDSDEQLSEVIQKAVNNKKARHAVFRNGRSEEPA 60


>Z49073-5|CAA88890.1| 1122|Caenorhabditis elegans Hypothetical
           protein ZK970.6 protein.
          Length = 1122

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
 Frame = +1

Query: 487 GRVRWHFWGNVR--GTPICLF 543
           GR  WHFW   R   TPIC F
Sbjct: 452 GRSVWHFWDGTRPLDTPICGF 472


>Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical
           protein ZK970.5 protein.
          Length = 1143

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
 Frame = +1

Query: 499 WHFWGNVR--GTPICLF 543
           WHFWG  R   TP+C F
Sbjct: 465 WHFWGGTRPPDTPVCGF 481


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,204,859
Number of Sequences: 27780
Number of extensions: 320264
Number of successful extensions: 588
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)