Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0735X.Seq
(359 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 118 3e-28
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 67 9e-13
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 48 6e-07
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 46 2e-06
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 41 7e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 37 0.001
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 34 0.006
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 26 1.5
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 2.0
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma... 26 2.0
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 2.0
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 4.7
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 24 6.2
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 24 8.2
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 24 8.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 118 bits (284), Expect = 3e-28
Identities = 52/63 (82%), Positives = 58/63 (92%)
Frame = +3
Query: 57 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGXPRHQGVMVGMGQTDSYVGHEAQSK 236
++++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVG PRH G+MVGMGQ DSYVG EAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 237 TGI 245
GI
Sbjct: 62 RGI 64
Score = 79.8 bits (188), Expect = 1e-16
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = +2
Query: 254 EYPIEHGIITNWDDMEKTWHHNFYNELRVAPEEHP 358
+YPIEHGI+ NWDDMEK WHH FYNELRVAPEEHP
Sbjct: 68 KYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHP 102
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 66.9 bits (156), Expect = 9e-13
Identities = 30/61 (49%), Positives = 40/61 (65%)
Frame = +3
Query: 63 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGXPRHQGVMVGMGQTDSYVGHEAQSKTG 242
D + +DNGSG KAGFAGDD P+ +FP+ VG +H+ VM Q D +VG EAQ+ G
Sbjct: 8 DNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRG 67
Query: 243 I 245
+
Sbjct: 68 L 68
Score = 44.0 bits (99), Expect = 7e-06
Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +2
Query: 260 PIEHGIITNWDDMEKTWHHNFYN-ELRVAPEEHP 358
PIE GII NW DME+ W + + + +L PEEHP
Sbjct: 74 PIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHP 107
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 47.6 bits (108), Expect = 6e-07
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +2
Query: 254 EYPIEHGIITNWDDMEKTWHHNFYNELRVAPEEH 355
+YPI HG I NWD ME+ W + + LR PE+H
Sbjct: 91 DYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDH 124
Score = 40.7 bits (91), Expect = 7e-05
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +3
Query: 75 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 158
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 45.6 bits (103), Expect = 2e-06
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +3
Query: 69 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGXP--RHQGVMVGMGQTDSYVGHEAQS 233
A +V+DNG+G K G+A D+ PR FPSIVG P R + + D VG EA++
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60
Score = 37.1 bits (82), Expect = 8e-04
Identities = 11/31 (35%), Positives = 24/31 (77%)
Frame = +2
Query: 254 EYPIEHGIITNWDDMEKTWHHNFYNELRVAP 346
+YP+E+GII ++++M + W + F+ +L++ P
Sbjct: 68 KYPMENGIIRDFEEMNQLWDYTFFEKLKIDP 98
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 40.7 bits (91), Expect = 7e-05
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 60 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 161
D+V+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 30.7 bits (66), Expect = 0.071
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 263 IEHGIITNWDDMEKTWHHNFYNELRVAPEEHP 358
I +G + NWD W + +L+ P EHP
Sbjct: 69 IRNGWVENWDVTVDLWRYGLEQQLKTNPLEHP 100
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 36.7 bits (81), Expect = 0.001
Identities = 23/79 (29%), Positives = 43/79 (54%)
Frame = +3
Query: 6 ESIPASPTQTHTKFKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGXPRHQGVM 185
E + + PT + F+ +D+ LV+DNGS +AG+ G+ P+ VF ++V R +
Sbjct: 8 EPVFSGPTPS---FQNVSNDIP-LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR--- 60
Query: 186 VGMGQTDSYVGHEAQSKTG 242
+ +T + VG++ + G
Sbjct: 61 -KLSRTSTLVGNDTLIEVG 78
Score = 29.5 bits (63), Expect = 0.16
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 260 PIEHGIITNWDDMEKTWHHNFYNELRVAPEEHP 358
P E +I+NWD ME+ + F +L + EHP
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHP 117
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 34.3 bits (75), Expect = 0.006
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +3
Query: 60 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 161
+++ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
Score = 27.1 bits (57), Expect = 0.88
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 269 HGIITNWDDMEKTWHHNFYNELRVAPEEH 355
+GII +W+ TW +L+V P E+
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEY 102
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 26.2 bits (55), Expect = 1.5
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -1
Query: 356 GAPRGLH-AAHCR-SCGARFSPCHPSW**YRARWGTQSEDACLALGFVTHV 210
GAP GL AAH S +F+P HP W R R+ + AC+ + H+
Sbjct: 34 GAPMGLAPAAHVLFSRIMKFNPAHPKW-LNRDRFILSNGHACVLQYIMCHL 83
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.8 bits (54), Expect = 2.0
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 120 GDDAPRAVFPSIVGXPRHQGVMVGMGQTDSYVGHEAQSKTG 242
G+ PRA F ++ P H G+++ M D G E S G
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKG 540
>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 25.8 bits (54), Expect = 2.0
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 257 YPIEHGIITNWDDMEKTWHHNFYNELRVAPE 349
YP G++ +W ++E N E+R+ P+
Sbjct: 244 YPRTDGLLFSWSELESMNSENMKPEIRLIPK 274
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 2.0
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +2
Query: 245 PHSEYPIEHGIITNWDDMEKTWHHNFYNELRVAPEE 352
P+ PI+ G + +W+ ++ W H Y+ L P +
Sbjct: 108 PNEIQPIQRGRVVDWEALKAFWKH-LYSLLLKDPND 142
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 4.7
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 75 LVVDNGSGMCKAGFAG 122
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 24.2 bits (50), Expect = 6.2
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = -2
Query: 283 GDDTVLDGVLRVRMPVLLWAS*PT*ESVWPIPTITPWW 170
GDD L G R +LW P + P+P + W
Sbjct: 94 GDDATLSGETIKRAAAILWHKIPEYQD-QPVPNFSNGW 130
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 23.8 bits (49), Expect = 8.2
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 134 GRVVAGETGLAHAGAIVDYKRSNIVVA 54
G+V+ G++ A A DYK+ ++A
Sbjct: 4 GKVIEGQSVAEWASAYFDYKKGKKIIA 30
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 23.8 bits (49), Expect = 8.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 82 STMAPACARPVSPATTRPAPSS 147
S AP+ P +P+T +P PS+
Sbjct: 107 SITAPSKTEPSTPSTEKPEPST 128
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,482,031
Number of Sequences: 5004
Number of extensions: 27936
Number of successful extensions: 102
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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