Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0735X.Seq
(359 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 132 1e-31
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 127 2e-30
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 126 7e-30
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 124 2e-29
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 124 2e-29
SB_56| Best HMM Match : Actin (HMM E-Value=0) 123 5e-29
SB_54| Best HMM Match : Actin (HMM E-Value=0) 58 2e-09
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 57 5e-09
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 3e-07
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 50 4e-07
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 1e-04
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 41 3e-04
SB_25667| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.12
SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.16
SB_32407| Best HMM Match : WSC (HMM E-Value=0.0008) 31 0.37
SB_20236| Best HMM Match : Pec_lyase_N (HMM E-Value=6.6) 30 0.49
SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7) 29 0.86
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84) 28 2.0
SB_56225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.0
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 28 2.6
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29) 28 2.6
SB_37603| Best HMM Match : Pox_A32 (HMM E-Value=0.0085) 28 2.6
SB_12700| Best HMM Match : POPLD (HMM E-Value=1.9) 28 2.6
SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.5
SB_8646| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-27) 27 3.5
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 27 3.5
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_15319| Best HMM Match : Transposase_9 (HMM E-Value=3.2) 27 4.6
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_37620| Best HMM Match : IncA (HMM E-Value=0.39) 27 4.6
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 27 4.6
SB_54780| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_37150| Best HMM Match : 7tm_1 (HMM E-Value=0.011) 27 6.1
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08) 27 6.1
SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
SB_51287| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
SB_44729| Best HMM Match : SET (HMM E-Value=0) 26 8.0
SB_42387| Best HMM Match : CH (HMM E-Value=2.7) 26 8.0
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01) 26 8.0
SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
SB_10531| Best HMM Match : SET (HMM E-Value=0) 26 8.0
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 132 bits (318), Expect = 1e-31
Identities = 61/65 (93%), Positives = 61/65 (93%)
Frame = +3
Query: 51 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGXPRHQGVMVGMGQTDSYVGHEAQ 230
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG PRHQGVMVGMGQ DSYVG EAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 231 SKTGI 245
SK GI
Sbjct: 61 SKRGI 65
Score = 81.8 bits (193), Expect = 2e-16
Identities = 31/35 (88%), Positives = 33/35 (94%)
Frame = +2
Query: 254 EYPIEHGIITNWDDMEKTWHHNFYNELRVAPEEHP 358
+YPIEHGI+TNWDDMEK WHH FYNELRVAPEEHP
Sbjct: 69 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 127 bits (307), Expect = 2e-30
Identities = 58/65 (89%), Positives = 60/65 (92%)
Frame = +3
Query: 51 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGXPRHQGVMVGMGQTDSYVGHEAQ 230
M DDD+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVG PRHQGVMVGMGQ DSYVG EAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 231 SKTGI 245
SK GI
Sbjct: 61 SKRGI 65
Score = 81.8 bits (193), Expect = 2e-16
Identities = 31/35 (88%), Positives = 33/35 (94%)
Frame = +2
Query: 254 EYPIEHGIITNWDDMEKTWHHNFYNELRVAPEEHP 358
+YPIEHGI+TNWDDMEK WHH FYNELRVAPEEHP
Sbjct: 69 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 126 bits (303), Expect = 7e-30
Identities = 58/63 (92%), Positives = 59/63 (93%)
Frame = +3
Query: 57 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGXPRHQGVMVGMGQTDSYVGHEAQSK 236
DDDVAALV+DNGSGMCKAGFAGDDAPRAVFPSIVG PRHQGVMVGMGQ DSYVG EAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 237 TGI 245
GI
Sbjct: 62 RGI 64
Score = 43.2 bits (97), Expect = 7e-05
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +2
Query: 254 EYPIEHGIITNWDDMEKTWHHNF 322
+YPIEHGI+TNWDDMEK F
Sbjct: 68 KYPIEHGIVTNWDDMEKIMFETF 90
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 124 bits (300), Expect = 2e-29
Identities = 58/65 (89%), Positives = 60/65 (92%)
Frame = +3
Query: 51 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGXPRHQGVMVGMGQTDSYVGHEAQ 230
M DD++AALVVDNGSGMCKAGFAGDDAPRAVFPSIVG PRHQGVMVGMGQ DSYVG EAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 231 SKTGI 245
SK GI
Sbjct: 61 SKRGI 65
Score = 81.8 bits (193), Expect = 2e-16
Identities = 31/35 (88%), Positives = 33/35 (94%)
Frame = +2
Query: 254 EYPIEHGIITNWDDMEKTWHHNFYNELRVAPEEHP 358
+YPIEHGI+TNWDDMEK WHH FYNELRVAPEEHP
Sbjct: 69 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 124 bits (300), Expect = 2e-29
Identities = 58/63 (92%), Positives = 59/63 (93%)
Frame = +3
Query: 57 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGXPRHQGVMVGMGQTDSYVGHEAQSK 236
+DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG PRHQGVMVGMGQ DSYVG EAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 237 TGI 245
GI
Sbjct: 62 RGI 64
Score = 81.8 bits (193), Expect = 2e-16
Identities = 31/35 (88%), Positives = 33/35 (94%)
Frame = +2
Query: 254 EYPIEHGIITNWDDMEKTWHHNFYNELRVAPEEHP 358
+YPIEHGI+TNWDDMEK WHH FYNELRVAPEEHP
Sbjct: 68 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 102
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 123 bits (296), Expect = 5e-29
Identities = 57/63 (90%), Positives = 59/63 (93%)
Frame = +3
Query: 57 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGXPRHQGVMVGMGQTDSYVGHEAQSK 236
+D+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG PRHQGVMVGMGQ DSYVG EAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 237 TGI 245
GI
Sbjct: 62 RGI 64
Score = 81.8 bits (193), Expect = 2e-16
Identities = 31/35 (88%), Positives = 33/35 (94%)
Frame = +2
Query: 254 EYPIEHGIITNWDDMEKTWHHNFYNELRVAPEEHP 358
+YPIEHGI+TNWDDMEK WHH FYNELRVAPEEHP
Sbjct: 68 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 102
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 58.0 bits (134), Expect = 2e-09
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = +3
Query: 18 ASPTQTHTKFKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGXPRHQ 176
AS T+ F+ V +V+DNGSG CKAG + D++PR VFP+IVG PRH+
Sbjct: 2080 ASVTKQQAAFEQNGGTV--VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 56.8 bits (131), Expect = 5e-09
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = +3
Query: 75 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGXPRHQ 176
LV+D GS M K GFAGDDAP+ VFP IVG PRHQ
Sbjct: 1359 LVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 50.8 bits (116), Expect = 3e-07
Identities = 21/39 (53%), Positives = 31/39 (79%)
Frame = -1
Query: 173 VARATHDGREDGAGRVVAGETGLAHAGAIVDYKRSNIVV 57
+AR+ DG E+G+G +V+GETGLAH GAI+D + +I+V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 50.4 bits (115), Expect = 4e-07
Identities = 23/60 (38%), Positives = 38/60 (63%)
Frame = +3
Query: 12 IPASPTQTHTKFKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGXPRHQGVMVG 191
IP + + ++ FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 683 IPRTKKRRYS-FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 42.3 bits (95), Expect = 1e-04
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +3
Query: 69 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGXP--RHQGVMVGMGQTDSYVGHEA 227
+ +V DNG+G K G+AG + P +FPS+VG P R + + D VG EA
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEA 61
Score = 37.1 bits (82), Expect = 0.004
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 257 YPIEHGIITNWDDMEKTWHHNF 322
YP+++GI+ NWDDM+ W + F
Sbjct: 72 YPMDNGIVRNWDDMKHVWDYTF 93
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 41.1 bits (92), Expect = 3e-04
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 251 SEYPIEHGIITNWDDMEKTWHHNFYNELRVAPEEH 355
+++PI H I+ +WD ME+ W + LR PE+H
Sbjct: 298 TKWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDH 332
>SB_25667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 32.3 bits (70), Expect = 0.12
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = +1
Query: 82 STMAPACARPVSPATTRPAPSSRPSWVALATRA*WSVWARQTPTWVTKPRARQ 240
S P+ R TT+P P +PSWV + + W TW +P Q
Sbjct: 36 SPSKPSDTRIADTTTTKPFPGYQPSWVKVK----YGAWYLNPKTWKARPDQEQ 84
>SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 739
Score = 31.9 bits (69), Expect = 0.16
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 46 SRCATTMLLRL*STM-APACARPVSPATTRPAPSSR 150
S C T+L+R T+ APA +P+SPAT P +R
Sbjct: 632 SSCLATLLVRPLETIPAPAPTKPISPATPASGPPTR 667
>SB_32407| Best HMM Match : WSC (HMM E-Value=0.0008)
Length = 832
Score = 30.7 bits (66), Expect = 0.37
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Frame = -1
Query: 221 VTHVGVCLAHTDHHALVARATHDGR---EDGAGRVVA--GETGLAHAGAIVDYKRSNIVV 57
+ HVG C+ ++A H G+ G ++A G+ +AH G + V+
Sbjct: 67 IAHVGQCIIANGDQCVIAHGAHGGQCVVAHGGQCMIAHGGQCMIAHVGQCIIANGGQCVI 126
Query: 56 AHLELCV 36
AH C+
Sbjct: 127 AHGGQCI 133
>SB_20236| Best HMM Match : Pec_lyase_N (HMM E-Value=6.6)
Length = 697
Score = 30.3 bits (65), Expect = 0.49
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 46 SRCATTMLLR-L*STMAPACARPVSPATTRPAPSSR 150
S C T+L+R L +T APA P SPAT P R
Sbjct: 21 SSCLATLLVRPLETTPAPAPTTPTSPATPASGPPIR 56
>SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7)
Length = 682
Score = 29.5 bits (63), Expect = 0.86
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 37 TQSSRCATTMLLRL*STM-APACARPVSPATTRPAPSSR 150
T S C T+L+R T+ APA P SPAT P R
Sbjct: 109 TSLSSCLATLLVRPLETIPAPAPTTPTSPATPASGPPIR 147
>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
Length = 509
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 31 KHTQSSRCATTMLLRL*STMAPACARPVSPATTRPAPSSRPS 156
K T ++ ATT + +T PA P +P TT P ++ P+
Sbjct: 63 KPTNTTPPATTTPTKPTTTTPPATTTPTTPTTTTPPATTTPT 104
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 31 KHTQSSRCATTMLLRL*STMAPACARPVSPATTRPAPSSRPS 156
K T ++ ATT + +T PA P P TT P ++ P+
Sbjct: 133 KPTTTTPPATTTPTKPTTTTPPATTTPTKPTTTTPPATTTPT 174
Score = 26.2 bits (55), Expect = 8.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 37 TQSSRCATTMLLRL*STMAPACARPVSPATTRPAPSSRPS 156
T ++ ATT + +T PA P P TT P ++ P+
Sbjct: 51 TTTTPPATTTPTKPTNTTPPATTTPTKPTTTTPPATTTPT 90
Score = 26.2 bits (55), Expect = 8.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 31 KHTQSSRCATTMLLRL*STMAPACARPVSPATTRPAPSSRPS 156
K T ++ ATT +T PA P P TT P ++ P+
Sbjct: 77 KPTTTTPPATTTPTTPTTTTPPATTTPTKPTTTTPPATTTPT 118
>SB_56225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 494
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 46 SRCATTMLLRL*STM-APACARPVSPATTRPAPSSR 150
S C T+L+R T+ APA P SPAT P R
Sbjct: 72 SSCLATLLVRPLETIPAPAPTTPTSPATPASGPPIR 107
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 69 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGXPRH 173
+ +++D GS KAGFA ++A + + S++G H
Sbjct: 483 SVIIIDLGSSSVKAGFAQEEA-QVFYISLIGILEH 516
>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
Length = 1851
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 46 SRCATTMLLR-L*STMAPACARPVSPAT 126
S C T+L+R L +T APA P SPAT
Sbjct: 21 SSCLATLLVRPLETTPAPAPTTPTSPAT 48
>SB_37603| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)
Length = 1411
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 46 SRCATTMLLR-L*STMAPACARPVSPAT 126
S C T+L+R L +T APA P SPAT
Sbjct: 21 SSCLATLLVRPLETTPAPAPTTPTSPAT 48
>SB_12700| Best HMM Match : POPLD (HMM E-Value=1.9)
Length = 461
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 46 SRCATTMLLR-L*STMAPACARPVSPAT 126
S C T+L+R L +T APA P SPAT
Sbjct: 14 SSCLATLLVRPLETTPAPAPTTPTSPAT 41
>SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1077
Score = 27.5 bits (58), Expect = 3.5
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 48 KMCDDDVAALVVDNG-SGMCKAGFAGD 125
++CD D + +N MCKAG+ GD
Sbjct: 487 RLCDKDAVCRLENNAIKCMCKAGYTGD 513
>SB_8646| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-27)
Length = 522
Score = 27.5 bits (58), Expect = 3.5
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +1
Query: 1 P*SQYQRPQHKHTQSSRCATTMLLRL*STM-APACARPVSPATTRPAPSSR 150
P + P T S C +L+R T+ APA P SPAT P R
Sbjct: 398 PADRRSEPLSAKTIVSSCLAPLLVRPLETIPAPAPTTPTSPATPASGPPIR 448
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 66 VAALVVDNGSGMCKAGFAGDDAPRAV 143
+A LV+D G+ K GFA + APR++
Sbjct: 233 MATLVLDCGACSQKIGFASNQAPRSI 258
Score = 26.2 bits (55), Expect = 8.0
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +2
Query: 260 PIEHGIITNWDDMEKTWHHNFYNE 331
P + G + NWD ++ W + F E
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTFGKE 315
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 27.1 bits (57), Expect = 4.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 148 GKTARGASSPAKPALHMPEP 89
G T R PAKPAL++P P
Sbjct: 80 GNTNRRTRIPAKPALNLPSP 99
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 27.1 bits (57), Expect = 4.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 178 PWWRGXPTMDGKTARGASSPAKPALHMPEP 89
P W G T R PAKP+L++P P
Sbjct: 530 PKWLQQVKDGGNTNRRTRIPAKPSLNLPSP 559
>SB_15319| Best HMM Match : Transposase_9 (HMM E-Value=3.2)
Length = 782
Score = 27.1 bits (57), Expect = 4.6
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 46 SRCATTMLLRL*STM-APACARPVSPATTRPAPSSR 150
S C T+++R T+ APA P SPAT P R
Sbjct: 51 SSCLATLVVRPLETIPAPAPTTPTSPATPASGPPIR 86
>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2541
Score = 27.1 bits (57), Expect = 4.6
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +1
Query: 46 SRCATTMLLR-L*STMAPACARPVSPAT 126
S C T L+R L +T APA P SPAT
Sbjct: 523 SSCLATFLVRTLETTPAPAPTTPTSPAT 550
>SB_37620| Best HMM Match : IncA (HMM E-Value=0.39)
Length = 307
Score = 27.1 bits (57), Expect = 4.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 353 APRGLHAAHCRSCGARFSP 297
+PRG +AHC+ CG + P
Sbjct: 26 SPRGKISAHCKDCGKQGDP 44
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 27.1 bits (57), Expect = 4.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 148 GKTARGASSPAKPALHMPEP 89
G T R PAKPAL++P P
Sbjct: 80 GNTNRRTRIPAKPALNLPSP 99
>SB_54780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 26.6 bits (56), Expect = 6.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 44 VQDVRRRCCCACSRQW 91
V+D+ CCAC R+W
Sbjct: 108 VKDILSSVCCACPRRW 123
>SB_37150| Best HMM Match : 7tm_1 (HMM E-Value=0.011)
Length = 211
Score = 26.6 bits (56), Expect = 6.1
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 46 SRCATTMLLR-L*STMAPACARPVSPATTRPAPSSR 150
S C T+L+R L + APA P SPAT A R
Sbjct: 148 SSCLATLLVRPLETAPAPAPTTPTSPATPASAAPIR 183
>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
Length = 1258
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 70 LRL*STMAPACARPVSPATTRPAP 141
L+L ST+ P+ P++PA P P
Sbjct: 185 LQLLSTLIPSTTAPINPAAINPTP 208
>SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1333
Score = 26.2 bits (55), Expect = 8.0
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +1
Query: 85 TMAPACARPVS-PATTRPAPSSRPSWVALATRA*WSVWARQTPTWVTKPRARQAS 246
T P P++ P+ RPAP W AT WS+ + ++P ++ S
Sbjct: 184 TSLPYTESPIAHPSLIRPAPIGIEIWYRYATWFLWSLRGYPVVSLASQPASQSVS 238
>SB_51287| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 276
Score = 26.2 bits (55), Expect = 8.0
Identities = 13/49 (26%), Positives = 19/49 (38%)
Frame = +1
Query: 130 RPAPSSRPSWVALATRA*WSVWARQTPTWVTKPRARQASSL*VPHRARY 276
RP + +P L T W+ R TW T R + + HR +
Sbjct: 219 RPLDTKQPGHRPLDTEQTWTTTTRHRTTWTTTTRHQTTWTTTTRHRTTW 267
>SB_44729| Best HMM Match : SET (HMM E-Value=0)
Length = 1112
Score = 26.2 bits (55), Expect = 8.0
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 22 PQHKHTQSSRCATTMLLRL*STMAPAC 102
PQ+KH ++++C T + L + P C
Sbjct: 729 PQYKHIKTNKCTTAQRIILDPSEMPVC 755
>SB_42387| Best HMM Match : CH (HMM E-Value=2.7)
Length = 703
Score = 26.2 bits (55), Expect = 8.0
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 58 TTMLLR-L*STMAPACARPVSPATTRPAPSSR 150
TT+L+R L +T APA P SP T P R
Sbjct: 185 TTLLVRPLETTPAPAPTTPTSPVTPASGPPIR 216
>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
Length = 1776
Score = 26.2 bits (55), Expect = 8.0
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +2
Query: 38 HKVQDVRRRCCCACSR 85
H+ D R CCC C R
Sbjct: 1438 HQFDDAIRECCCLCCR 1453
>SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1228
Score = 26.2 bits (55), Expect = 8.0
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 60 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGXPRH 173
D LVVD G G+ GD R + SI+ P++
Sbjct: 292 DQGGGLVVDQGGGLVVVQGEGDKKRRDIVQSILHVPKY 329
>SB_10531| Best HMM Match : SET (HMM E-Value=0)
Length = 287
Score = 26.2 bits (55), Expect = 8.0
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 22 PQHKHTQSSRCATTMLLRL*STMAPAC 102
PQ+KH ++++C T + L + P C
Sbjct: 96 PQYKHIKTNKCTTAQRIILDPSEMPVC 122
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,347,180
Number of Sequences: 59808
Number of extensions: 244878
Number of successful extensions: 813
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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