Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0735X.Seq
         (359 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   3.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   5.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   5.9  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              20   7.7  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              20   7.7  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              20   7.7  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 96  GMCKAGFAGD 125
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 16  QRPQHKHTQSSRCATTMLLRL*STMAPACARPVSPAT 126
           +RPQ+K   +   +  +L+R        C  P  P+T
Sbjct: 360 RRPQYKFETNRYSSGRVLMRTVRGKEKTCYYPYHPST 396


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 16  QRPQHKHTQSSRCATTMLLRL*STMAPACARPVSPAT 126
           +RPQ+K   +   +  +L+R        C  P  P+T
Sbjct: 360 RRPQYKFETNRYSSGRVLMRTVRGKEKTCYYPYHPST 396


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 52 ILNFVCVCVG 23
          I++ +CVCVG
Sbjct: 6  IISAICVCVG 15


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 52 ILNFVCVCVG 23
          I++ +CVCVG
Sbjct: 6  IISAICVCVG 15


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 52 ILNFVCVCVGDAGI 11
          I++ +C+CVG   I
Sbjct: 6  IISAICICVGALSI 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,524
Number of Sequences: 438
Number of extensions: 1803
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)