Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0734.Seq
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    27   2.0  
SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   2.0  
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   8.0  

>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -1

Query: 532 LSNVKTQK---LKHGT*SLHPLTSSYNDSRKTRGQTVKVVLIVSMTCVNRSKYSLQL 371
           LSNV T+K    +HG  S   L SS   S+   G+   V L     C+N SK S Q+
Sbjct: 168 LSNVFTEKSSDYRHGLGSPTSLVSSNTASKLHLGRKDIVKLSELRNCINSSKDSNQI 224


>SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 268

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 615 SYI*IKSTSNKFVYRFLKINNLYH 686
           SYI +KS+S  FVY +  +N  YH
Sbjct: 201 SYIELKSSSILFVYDYSSLNPTYH 224


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 170 KSYSV*DVRNKQTISIPTPR*LNINTFLEDYSEAIEKKSITCN 298
           K YS        T+++     L+ NTFL    + IE++S +C+
Sbjct: 213 KDYSSSTALLNNTVAVKQDHKLSANTFLSSPVKLIERESNSCS 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,200
Number of Sequences: 5004
Number of extensions: 54818
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)