Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0734.Seq
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039051-6|AAB94266.2|  448|Caenorhabditis elegans Hypothetical ...    30   1.9  
AF024500-2|AAB70360.1|  467|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z83125-8|CAB05623.1|  507|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z69789-2|CAA93651.1|  137|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AF039051-6|AAB94266.2|  448|Caenorhabditis elegans Hypothetical
           protein C14C6.8 protein.
          Length = 448

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +2

Query: 17  FYQLIDFILY--LNNLTFFYF*YKNVLDFAKLVVN 115
           F Q++DFI Y  L   TFF+   +NV D+ +++++
Sbjct: 173 FLQIVDFIEYHKLQGATFFHIYLRNVTDYDRMMLD 207


>AF024500-2|AAB70360.1|  467|Caenorhabditis elegans Hypothetical
           protein K06H6.4 protein.
          Length = 467

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +2

Query: 17  FYQLIDFILY--LNNLTFFYF*YKNVLDFAKLVVN 115
           F Q++DFI Y  L   TFF+   +NV D+ +++++
Sbjct: 192 FLQIVDFIEYHKLQGATFFHIYLRNVTDYDRMMLD 226


>Z83125-8|CAB05623.1|  507|Caenorhabditis elegans Hypothetical
           protein T15D6.10 protein.
          Length = 507

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +2

Query: 17  FYQLIDFILY--LNNLTFFYF*YKNVLDFAKLVVN 115
           F Q++DFI Y  L   TFF+   +NV D+ +++++
Sbjct: 228 FLQIVDFIEYHKLQGATFFHIYLRNVSDYDRMLLD 262


>Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical
           protein F55G11.9 protein.
          Length = 1431

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 155 NRAKTKSYSV*DVRNKQTISIPTPR*LNINTFLEDYSEAIEKKSIT 292
           N +  +  ++ DV +K ++   +PR  N   F EDYS  +E  S+T
Sbjct: 55  NWSPAREVNINDVTHKYSLKCGSPRIDNFENFFEDYS--VEWNSVT 98


>Z69789-2|CAA93651.1|  137|Caenorhabditis elegans Hypothetical
           protein F17H10.4 protein.
          Length = 137

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
 Frame = +2

Query: 26  LIDFILYLNNLTFFYF*YKN-----VLDFAKLVV 112
           L D I + +NLTFF F YKN      L+ AK+++
Sbjct: 86  LEDIIAFSSNLTFFKFVYKNRMKLFPLNIAKIII 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,615,247
Number of Sequences: 27780
Number of extensions: 291279
Number of successful extensions: 463
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)