Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0732.Seq
         (664 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   1.7  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   1.7  
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    23   2.2  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    22   3.9  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   3.9  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   6.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.0  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 501 LPADRQGGVATTEHVHNVVH 442
           +P  R GGV + EH H   H
Sbjct: 10  MPDMRNGGVVSAEHPHQHQH 29


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 501 LPADRQGGVATTEHVHNVVH 442
           +P  R GGV + EH H   H
Sbjct: 10  MPDMRNGGVVSAEHPHQHQH 29


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
          protein 20 protein.
          Length = 124

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 92 CTSTALARPHKSCCVKLFDVRLQ 24
          C S ALARP     +K  +V L+
Sbjct: 11 CVSVALARPEDQYTIKYDNVNLK 33


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 268 TLRQGPAPFKATSAAG 315
           +LR+G APF  ++ AG
Sbjct: 278 SLREGAAPFMVSATAG 293


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 362 GGLSSCPAPGCGSGL 318
           GGLS  P P  G GL
Sbjct: 89  GGLSGMPMPALGFGL 103


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = +3

Query: 408 GQLQFSGRERGHEQRCVHVPLSRLRPDGP 494
           G+L     ER     C   P  +L PD P
Sbjct: 346 GELAVCVNERPWSLYCGEPPCGQLNPDNP 374


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +1

Query: 280 GPAPFKATSAAGHKPLPQPGA 342
           GP P    S  G  P   PGA
Sbjct: 102 GPIPVSMASKMGLAPTGHPGA 122


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,909
Number of Sequences: 336
Number of extensions: 2896
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)