Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0732.Seq
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    64   2e-11
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    29   0.79 
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    27   1.8  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    26   5.6  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    25   7.4  
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual     25   7.4  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   9.7  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    25   9.7  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    25   9.7  
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces...    25   9.7  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 1/147 (0%)
 Frame = +1

Query: 226 LAQSEAGHADHKNPTLRQ-GPAPFKATSAAGHKPLPQPGAGQLDKPPVFTRDGKKWLIEY 402
           L + +     HKNP LR+ GP P          P  +P      KPP    +  KW +E 
Sbjct: 351 LRKVDKSEMTHKNPNLRKTGPTPGPKPKIKSSAP-SKPAETAPVKPPRIELENTKWFVEN 409

Query: 403 QKGNSNLVVENADMNNVVYMFRCRDSALTVRGKVNGSCWTRAPSAXXXXXXXXXXXXXXX 582
           Q  N ++V+++ ++N+ V +F C +  + ++GK+N    +                    
Sbjct: 410 QVDNHSIVLDSVELNHSVQIFGCSNCTIIIKGKLNTVSMSNCKRTSVVVDTLVAAFDIAK 469

Query: 583 XXXXXXXYLGKVPTVSIDKTDGCQIYL 663
                   +  VP + ID+ DG  IYL
Sbjct: 470 CSNFGCQVMNHVPMIVIDQCDGGSIYL 496



 Score = 28.7 bits (61), Expect = 0.79
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 3   WVQLLSDLQAYVKQFHTTGLVWSGKGSA 86
           ++ LL++L  YVK    TGL WS K  A
Sbjct: 250 YLTLLTELITYVKTHFKTGLTWSTKQDA 277


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -3

Query: 632 METVGTLPKY-LHLYGLAVDELDAGYEVVEHDRALGARVQHDPLTFPRTVRAESRQRNMY 456
           +ET+  + KY L L    V E++   EV+ H++A    ++      P  V   SR R+  
Sbjct: 486 LETLEKITKYILKLLSKTVLEVEVNIEVIHHEKAKHLIIEMIDYIEPSLVVMGSRGRSHL 545

Query: 455 TTLFMSAFS 429
             + + +FS
Sbjct: 546 KGVLLGSFS 554


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -3

Query: 659 YI*HPSVLSMETVGTLPKYLHLYGLAVDELDAGYEVVEHDRALGARVQHDP 507
           ++ H + L M+    +   L+L  L V  LD  YE+    R  GA + H+P
Sbjct: 287 FVTHHNDLDMDLYMRIAPELYLKMLVVGGLDRVYEIGRQFRNEGADLTHNP 337


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 662 RYI*HPSVLSMETVGTLPKYLHLYGLAVDELDAGYEVVEHDR 537
           R + HP+++++  V  +PKY  L  L   + D    VV+H+R
Sbjct: 76  RQLHHPNIITLYQVFRVPKYTVL-ALEYMDTDLHSMVVKHNR 116


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -2

Query: 621 WNF-AQIPASVRTGS*RTRCWIRGC 550
           W+  AQIP +++ G+    CW  GC
Sbjct: 386 WSLNAQIPRTLQYGNADCSCWTTGC 410


>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 136 CCQTWTSPTCRSMTAALS 189
           CC T   PTCR+  A+L+
Sbjct: 23  CCLTLEKPTCRTCLASLT 40


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
 Frame = +1

Query: 238 EAGHADHKNPTLRQGPA------PFKATSAAGHKPLPQPGAGQ 348
           E   A ++NP L+QG A      P +  S    KP  QP  GQ
Sbjct: 372 EINFASNRNPHLKQGGAVPSSTLPQQQKSLDKPKPAQQPSTGQ 414


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -2

Query: 186 ERCGHRATSWRSPRLAARAA 127
           ++CG++  +W++P L AR +
Sbjct: 271 KKCGYQMMAWKNPALNARVS 290


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +1

Query: 265 PTLR-QGPAPFK-ATSAAGHKPLPQPGAGQLDKPPV 366
           PTL  QG  P +     A HKPLP+P      + PV
Sbjct: 701 PTLHPQGQLPIQNVEQRATHKPLPRPPVQVETREPV 736


>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 382

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 19  PICKRTSNSFTQQDLCGLARAVLVHPHRLPRED-FPLRRPCCQTWTSPTCRSMTAALSSP 195
           P+ + +S++   QD C L +    H H++ R+    +R+ C    ++ T   +   + S 
Sbjct: 277 PLPELSSDTKVDQDKCALIKQCANHFHQIIRDSPVKVRQACYLPISNATGAPVIGKIGSS 336

Query: 196 KSIEAKH 216
             + A H
Sbjct: 337 IYVAAAH 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,520,563
Number of Sequences: 5004
Number of extensions: 47057
Number of successful extensions: 159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)