Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0732.Seq
(664 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0850 + 21862110-21862394,21862555-21862723,21862901-218629... 77 1e-14
03_05_0954 - 29113938-29114024,29114277-29114444,29115156-291152... 60 2e-09
04_03_1031 + 21850857-21851009,21852229-21852350,21852447-218528... 33 0.20
01_06_0217 - 27624588-27625817,27626203-27626484,27626582-27626692 30 1.9
06_01_1115 - 9186521-9187000 29 2.5
01_03_0015 + 11669321-11670070 29 4.4
07_01_0702 + 5288588-5288889,5289257-5289407,5289543-5289725,529... 28 5.8
09_02_0468 - 9608922-9610061 28 7.6
04_04_0850 - 28697462-28697684,28697894-28697971,28698103-286984... 28 7.6
04_04_0499 + 25674024-25674233,25674515-25675072,25675320-256754... 28 7.6
04_01_0009 - 178579-178638,179151-179246,179504-179565,180181-18... 28 7.6
02_03_0185 - 16134426-16134881 28 7.6
>08_02_0850 +
21862110-21862394,21862555-21862723,21862901-21862965,
21863632-21863905,21863998-21864145,21864237-21864346,
21864440-21864495,21864568-21864624,21864733-21864876,
21865304-21865351
Length = 451
Score = 77.4 bits (182), Expect = 1e-14
Identities = 44/136 (32%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Frame = +1
Query: 259 KNPTLRQGPAPFKATSAAGHKPLPQPGAGQLDKPPVFTRD-GKKWLIEYQKGNSNLVVEN 435
KN T R G +A G + +P + P G+KW++E+ GN NLV+E+
Sbjct: 276 KNRTDRTG-----VVAAEGKEAHKKPSSSSTKLPSKLELQMGRKWIVEHHVGNKNLVIED 330
Query: 436 ADMNNVVYMFRCRDSALTVRGKVNGSCWTRAPSAXXXXXXXXXXXXXXXXXXXXXXYLGK 615
D +Y+F C+DS L V+GKVN + G
Sbjct: 331 CDTKQSIYVFGCKDSVLQVKGKVNNITIDKCSKMGLLFKGVVAACEIVNCNSIEVQCEGS 390
Query: 616 VPTVSIDKTDGCQIYL 663
VPT+SID T GCQ+YL
Sbjct: 391 VPTISIDNTSGCQLYL 406
>03_05_0954 -
29113938-29114024,29114277-29114444,29115156-29115212,
29115314-29115369,29115463-29115572,29116142-29116310,
29116418-29116742,29117378-29117442,29117541-29117712,
29118191-29118484
Length = 500
Score = 60.1 bits (139), Expect = 2e-09
Identities = 42/147 (28%), Positives = 59/147 (40%), Gaps = 12/147 (8%)
Frame = +1
Query: 259 KNPTLRQGPAPFKATSAAGHKPLPQPGAGQLD----KPPVFTRDGKKWLIEYQKGNSNLV 426
KN + R G +T+A P AG P + + G+KW++E Q G NL
Sbjct: 297 KNRSDRSGVVS-SSTAAPAAAPEKTSRAGSFSFKSGPPKLELQMGRKWVVENQVGKKNLA 355
Query: 427 VENADMNNVVYMFRCRDSALTVRGKVNGSCWTRAPS--------AXXXXXXXXXXXXXXX 582
+++ D VY++ C+DS L V GKVN +
Sbjct: 356 IDDCDARQSVYVYGCKDSVLQVNGKVNNITVDKCTKVGIVFKHVVAAFEVVNCNGVEVQC 415
Query: 583 XXXXXXXYLGKVPTVSIDKTDGCQIYL 663
G PT+SID T GCQ+YL
Sbjct: 416 QRLKFFNLQGTAPTISIDNTSGCQLYL 442
Score = 37.5 bits (83), Expect = 0.009
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +3
Query: 510 VVLDSCTKCAVVFDNLVSSIEFVNCQSVQMQ 602
+ +D CTK +VF ++V++ E VNC V++Q
Sbjct: 384 ITVDKCTKVGIVFKHVVAAFEVVNCNGVEVQ 414
>04_03_1031 + 21850857-21851009,21852229-21852350,21852447-21852891,
21852981-21853087,21853192-21854524,21854632-21854859,
21854951-21855181,21855278-21855537,21855651-21856113
Length = 1113
Score = 33.1 bits (72), Expect = 0.20
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +1
Query: 241 AGHADHKNPTLRQG---PAPFKATSAAGHKPLPQPGAGQLDKPPVFTRDGKKWLIEYQKG 411
A HA H P LR G PAP ++SAA LP+ ++DK TR G LI +G
Sbjct: 871 ADHAQHVVPVLRAGHGAPAPQASSSAASSSGLPECKGEKIDK---LTRVGLLQLISNVEG 927
>01_06_0217 - 27624588-27625817,27626203-27626484,27626582-27626692
Length = 540
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 398 SISHFLPSRVKTGGLSSCPAPGCGSGLCPAADVALNGAG 282
+I H P ++ GLSSCP C A A+ G+G
Sbjct: 403 NIQHQQPQPLQQHGLSSCPPQPSKPNHCSVASYAVQGSG 441
>06_01_1115 - 9186521-9187000
Length = 159
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 192 RXERCGHRATSWRSPRLAARAAEGEV 115
R RCG RAT+WR R A + EV
Sbjct: 24 RLPRCGRRATAWRGGREATQRGGTEV 49
>01_03_0015 + 11669321-11670070
Length = 249
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Frame = +1
Query: 244 GHADHKNPTLRQGPAPFKA---TSAAGHKPLPQP----GAGQLDKPPVFTRDGK 384
G +HKNP ++ P P + HK LP P G GQ+D P + G+
Sbjct: 2 GAGEHKNPGAQEPPLPCGGEVPRHESFHKHLPIPAAGVGGGQVDNPSSYQIAGR 55
>07_01_0702 +
5288588-5288889,5289257-5289407,5289543-5289725,
5290063-5290137,5290248-5290403,5290502-5290597,
5290855-5290985,5291057-5291138,5291237-5291586,
5293029-5293234,5293254-5293570
Length = 682
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2
Query: 177 GHRATSWRSPRLAARAAEGEVLPGEA 100
G +AT+W++PR AA + G + PG A
Sbjct: 517 GQQATNWQNPRTAA-SRRGSIEPGPA 541
>09_02_0468 - 9608922-9610061
Length = 379
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Frame = +1
Query: 106 PREDFPLRRPCCQTWTSPTCRSMTAALSSPKSIEAKHN*LLAQSEAGHADHKNPTLRQGP 285
P+E P+RRP +P + A P L+ +S + P + P
Sbjct: 273 PKEPVPVRRPPIAVPAAPQPENRVAPPPPPPRARRCLRALMMESGSDTEAAPKPKTKPKP 332
Query: 286 AP--FKATSAAGHKPLPQPGA 342
P + A HKP P P A
Sbjct: 333 KPSSCRFQCVADHKPPPPPPA 353
>04_04_0850 -
28697462-28697684,28697894-28697971,28698103-28698495,
28698590-28698893,28698978-28699188,28699943-28700674
Length = 646
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 141 AARAAEG-EVLPGEAVGVYQHCPCQTTQVLLCETV*RTL 28
A AEG EV G+ Y+ CP + ++ CE V R+L
Sbjct: 95 AHHTAEGMEVASGQVHRTYEACPAKYSEYTPCEDVERSL 133
>04_04_0499 +
25674024-25674233,25674515-25675072,25675320-25675415,
25675509-25675601,25675882-25676125,25676239-25676276,
25676377-25676478
Length = 446
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +1
Query: 268 TLRQGPAPFKATSAAGHKPLPQPGAGQLDKPP 363
T+ GP P + AA P P P + PP
Sbjct: 166 TVEAGPLPLPSVDAAVASPAPSPAVAAVPPPP 197
>04_01_0009 -
178579-178638,179151-179246,179504-179565,180181-180245,
181271-181363,181489-181592,182070-182153,182223-182303,
182829-182880,183048-183119,183411-183486,183568-183680,
184056-184203,184295-184372,184511-184640,184733-184923,
187039-187099,187201-187371
Length = 578
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = -3
Query: 365 TGGLSSCPAPGCGSGLCPAADVALNGAG 282
TGG SS PA SGLC AA + +G G
Sbjct: 272 TGGSSSGPAALVSSGLCSAA-IGTDGGG 298
>02_03_0185 - 16134426-16134881
Length = 151
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -2
Query: 195 RRXERCGHRATSWRSPRLAARAAEGE 118
RR RC RA W PR R EG+
Sbjct: 16 RRRRRCSERARRWLPPRRWRRRREGK 41
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,505,127
Number of Sequences: 37544
Number of extensions: 403929
Number of successful extensions: 1600
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1598
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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